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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Mouse brain, Intensity
Medulla oblongatai

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

100.522
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:467.5 nTPM
FANTOM5:250.6 Scaled Tags Per Million
Pig:296.0 nTPM
Allen mouse:0.2 Expression energy

MEDULLA OBLONGATA - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA069245
Medulla oblongata mean intensity 100.522
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Nucleus of the solitary tract 76.695
Raphe magnus nucleus 57.116
Cochlear nucleus 59.048
Lateral paragigantocellular nucleus 45.499
Raphe pallidus nucleus 56.210
Facial nucleus 53.373
Hypoglossal nucleus 17.950
Ambiguus nucleus 11.305
External cuneate nucleus 29.473
Inferior olivary nucleus 42.185
Raphe obscures nucleus 16.037
Dorsal motor nucleus of vagus 59.180

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

467.5
Sample id Sample description nTPM
Area postrema
nTPM: 377.0
2799 Male, age 61, both hemispheres 560.9
2306 Male, age 80, both hemispheres 381.0
2054 Male, age 76, both hemispheres 189.0
Dorsal medullary reticular nucleus
nTPM: 210.9
2373 Male, age 61, both hemispheres 265.2
2040 Female, age 85, both hemispheres 221.0
2088 Male, age 76, both hemispheres 146.4
Dorsal motor vagal complex
nTPM: 309.8
2797 Male, age 61, both hemispheres 643.9
2813 Female, age 72, unknown 399.3
2000 Male, age 74, unknown 349.3
2844 Male, age 55, unknown 310.0
2185 Male, age 76, both hemispheres 298.4
2643 Male, age 74, both hemispheres 174.1
2807 Female, age 85, both hemispheres 156.3
2133 Female, age 91, both hemispheres 147.2
Gigantocellular reticular nuclei, medullary
nTPM: 220.4
2314 Male, age 61, both hemispheres 363.0
2462 Male, age 74, both hemispheres 279.2
1876 Female, age 85, both hemispheres 216.9
2022 Male, age 76, right hemisphere 188.4
2387 Female, age 91, both hemispheres 179.3
2310 Male, age 80, both hemispheres 95.6
Gigantocellular reticular nuclei, pars
nTPM: 177.5
2084 Female, age 85, both hemispheres 217.1
2706 Male, age 80, both hemispheres 175.4
2330 Male, age 80, both hemispheres 167.1
2168 Male, age 76, both hemispheres 166.7
2336 Male, age 61, both hemispheres 161.2
Inferior olive
nTPM: 467.5
2085 Female, age 85, both hemispheres 584.5
2379 Male, age 80, both hemispheres 527.3
2178 Male, age 61, both hemispheres 449.6
2563 Male, age 74, both hemispheres 443.4
2628 Female, age 91, both hemispheres 332.7
Lateral medullary reticular nucleus
nTPM: 362.6
2374 Male, age 61, both hemispheres 456.3
2305 Male, age 74, both hemispheres 402.8
2804 Female, age 91, both hemispheres 390.2
2190 Female, age 85, both hemispheres 366.2
2852 Male, age 80, both hemispheres 315.5
2044 Male, age 76, both hemispheres 244.5
Medial olivary nucleus
nTPM: 394.0
2138 Female, age 91, both hemispheres 578.0
1962 Male, age 76, both hemispheres 374.2
1943 Male, age 61, both hemispheres 337.6
2851 Male, age 80, both hemispheres 286.0
Medial vestibular nucleus
nTPM: 225.4
2743 Female, age 85, both hemispheres 296.3
2801 Male, age 74, both hemispheres 267.1
2134 Male, age 76, both hemispheres 239.9
2093 Male, age 80, both hemispheres 217.2
2803 Female, age 91, both hemispheres 168.0
2624 Male, age 61, both hemispheres 163.7
Motor hypoglossal nucleus
nTPM: 178.8
2461 Male, age 61, both hemispheres 341.8
2125 Female, age 91, both hemispheres 181.0
2277 Male, age 76, both hemispheres 137.9
2182 Male, age 80, both hemispheres 134.3
2132 Female, age 85, both hemispheres 99.0
Nucleus ambiguus
nTPM: 254.1
2071 Male, age 76, both hemispheres 417.9
2096 Female, age 85, both hemispheres 90.3
Nucleus cuneatus
nTPM: 275.7
2562 Male, age 61, both hemispheres 372.9
2564 Male, age 74, both hemispheres 355.7
2380 Male, age 80, both hemispheres 335.0
2808 Female, age 85, both hemispheres 334.9
2100 Male, age 76, both hemispheres 261.7
2376 Male, age 61, both hemispheres 252.2
2381 Male, age 80, both hemispheres 208.8
2131 Male, age 76, both hemispheres 183.2
2805 Female, age 91, both hemispheres 176.9
Nucleus gracilis
nTPM: 309.3
2627 Male, age 74, both hemispheres 498.9
2299 Female, age 85, both hemispheres 257.5
2382 Male, age 80, both hemispheres 171.7
Nucleus raphe obscurus
nTPM: 276.1
2142 Male, age 76, midline 318.4
2845 Female, age 85, midline 286.3
2800 Male, age 61, midline 223.7
Nucleus raphe pallidus
nTPM: 193.0
2145 Male, age 76, midline 272.5
1924 Male, age 61, midline 159.0
2183 Male, age 80, midline 147.5
Nucleus tractus solitarii
nTPM: 316.6
2144 Female, age 91, right hemisphere 617.3
2191 Female, age 85, both hemispheres 320.0
2656 Male, age 76, both hemispheres 178.1
2307 Male, age 80, both hemispheres 150.8
Parvicellular reticular nuclei
nTPM: 166.3
2095 Male, age 76, both hemispheres 242.9
2119 Male, age 80, both hemispheres 182.0
2558 Male, age 74, both hemispheres 74.1
Parvicellular reticular nuclei, medullary
nTPM: 193.3
2091 Female, age 85, both hemispheres 214.2
2181 Male, age 80, left hemisphere 211.3
2189 Female, age 91, both hemispheres 154.6
Peritrigeminal nucleus
nTPM: 307.1
2067 Female, age 85, both hemispheres 361.4
2136 Male, age 76, both hemispheres 322.2
2179 Male, age 61, both hemispheres 237.6
Prepositus hypoglossal nucleus
nTPM: 335.9
2086 Male, age 80, both hemispheres 392.9
2855 Female, age 85, right hemisphere 278.9
Spinal trigeminal nucleus, caudal
nTPM: 231.4
2312 Male, age 61, both hemispheres 317.0
2308 Male, age 80, both hemispheres 246.9
2642 Male, age 74, both hemispheres 246.6
2447 Male, age 76, both hemispheres 191.9
2390 Female, age 91, both hemispheres 154.7
Spinal trigeminal nucleus, interpolar
nTPM: 191.4
2066 Male, age 76, right hemisphere 220.4
2386 Female, age 85, both hemispheres 215.9
2625 Male, age 61, both hemispheres 212.8
2033 Male, age 80, both hemispheres 154.1
2389 Female, age 91, both hemispheres 153.8
Spinal vestibular nucleus
nTPM: 174.2
2806 Female, age 85, both hemispheres 259.1
2748 Male, age 76, both hemispheres 189.9
2780 Male, age 80, both hemispheres 159.2
2186 Female, age 91, both hemispheres 154.6
2796 Male, age 61, both hemispheres 145.8
2384 Male, age 74, both hemispheres 136.6
Superior vestibular nucleus
nTPM: 375.1
2383 Male, age 74, both hemispheres 561.6
2061 Male, age 76, both hemispheres 295.2
2015 Male, age 80, both hemispheres 268.6
Ventral medullary reticular nucleus
nTPM: 286.2
2372 Male, age 61, both hemispheres 434.0
2060 Male, age 76, both hemispheres 138.5
Ventrolateral medulla, A1-C1 cell groups
nTPM: 271.4
2302 Female, age 91, both hemispheres 316.4
1986 Male, age 76, both hemispheres 290.4
2180 Male, age 61, both hemispheres 275.2
2741 Female, age 85, both hemispheres 241.5
2118 Male, age 80, both hemispheres 233.7

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

250.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 250.6
FF:10155-103A2 76 years, female 356.6
FF:10174-103C3 60 years, female 248.5
FF:10038-101F2 18-64 years, mixed 146.8

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

296.0
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 296.0
Samples: 4

Max nTPM: 397.0
Min nTPM: 244.9
Sample A Female 273.9
Sample B Female 268.1
Sample C Male 244.9
Sample D Male 397.0

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

0.2
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 0.2
69257331 Antisense, RP_050331_02_D01, Mouse strain C57BL/6J (56 days, male) 0.2

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