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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:908.5 nTPM
HPA Brain:792.3 nTPM
GTEx:908.5 nTPM
FANTOM5:1354.9 Scaled Tags Per Million
Pig:558.6 nTPM
Mouse:786.7 nTPM
Allen mouse:38.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

792.3
Sample id Sample description nTPM
Amygdala
nTPM: 334.3
1987 Female, age 91, left hemisphere 620.4
2517 Female, age 94, left hemisphere 491.8
2514 Male, age 75, right hemisphere 339.6
2814 Male, age 76, right hemisphere 118.5
2695 Female, age 67, right hemisphere 101.1
Basal amygdala
nTPM: 792.3
2243 Female, age 91, right hemisphere 1202.2
2685 Female, age 94, left hemisphere 1017.7
2110 Male, age 80, left hemisphere 982.5
2827 Female, age 67, right hemisphere 671.1
1955 Male, age 76, both hemispheres 544.7
2609 Male, age 75, right hemisphere 335.5
Central amygdala
nTPM: 752.0
2826 Female, age 94, left hemisphere 1487.7
2239 Male, age 80, left hemisphere 1237.0
2701 Female, age 91, right hemisphere 650.5
2515 Male, age 75, right hemisphere 350.9
1905 Male, age 76, both hemispheres 33.6
Corticomedial amygdala
nTPM: 662.1
2829 Male, age 80, left hemisphere 1160.8
2242 Female, age 91, right hemisphere 818.4
2535 Female, age 67, right hemisphere 673.6
2429 Female, age 94, left hemisphere 600.5
2240 Male, age 76, both hemispheres 473.0
2428 Male, age 75, right hemisphere 246.0
Lateral amygdala
nTPM: 780.9
2534 Female, age 94, left hemisphere 1607.9
2256 Male, age 80, left hemisphere 1331.6
2255 Female, age 91, right hemisphere 701.6
1883 Male, age 76, both hemispheres 417.2
2830 Female, age 67, right hemisphere 395.5
2516 Male, age 75, right hemisphere 231.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

908.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 908.5
Samples: 152

Max nTPM: 3602.7
Min nTPM: 50.4
Std nTPM: 598.4
Median nTPM: 739.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 3602.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 2983.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 2822.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 2731.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 2369.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 2232.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 2168.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 2101.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 2003.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1959.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1889.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1827.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1800.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1745.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1721.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 1641.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 1613.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1578.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 1577.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1515.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1494.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1440.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1429.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1398.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1394.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1352.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1343.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1315.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1272.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 1256.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1243.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1238.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1224.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 1221.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1221.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1210.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1183.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1180.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 1162.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 1158.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1155.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 1151.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1149.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1147.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1118.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1106.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 1101.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1098.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1064.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1044.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 1041.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1034.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1033.6
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1032.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 1030.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1023.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1020.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1012.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 970.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 952.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 922.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 911.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 893.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 886.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 871.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 857.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 830.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 812.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 796.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 773.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 767.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 767.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 761.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 758.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 752.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 741.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 737.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 736.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 719.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 700.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 700.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 696.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 691.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 689.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 685.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 680.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 665.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 659.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 659.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 657.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 656.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 654.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 649.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 636.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 633.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 622.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 608.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 608.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 604.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 589.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 586.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 576.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 571.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 568.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 565.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 556.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 553.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 543.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 540.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 538.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 513.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 511.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 509.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 495.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 473.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 467.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 466.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 462.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 460.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 460.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 458.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 447.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 446.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 446.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 431.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 420.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 418.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 412.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 395.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 370.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 353.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 352.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 351.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 351.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 351.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 331.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 324.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 316.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 286.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 269.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 266.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 252.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 241.7
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 216.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 193.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 192.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 184.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 175.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 164.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 137.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 94.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 50.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

1354.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 1354.9
FF:10151-102I7 76 years, female 1354.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

558.6
Pig sample Sample description nTPM
Amygdala
nTPM: 558.7
Samples: 4

Max nTPM: 949.5
Min nTPM: 401.4
Sample A Female 949.5
Sample B Female 401.4
Sample C Male 460.0
Sample D Male 423.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

786.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 786.7
Samples: 4

Max nTPM: 1228.3
Min nTPM: 612.4
Sample A Male 612.4
Sample B Male 669.6
Sample C Female 1228.3
Sample D Female 636.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

38.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 38.9
69153790 Antisense, RP_050330_01_A03, Mouse strain C57BL/6J (56 days, male) 38.9
69153759 Antisense, RP_050330_01_A03, Mouse strain C57BL/6J (56 days, male) 30.2
736 Antisense, RP_050330_01_A03, Mouse strain C57BL/6J (56 days, male) 11.2
737 Antisense, RP_050330_01_A03, Mouse strain C57BL/6J (56 days, male) 10.2

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