We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
60.6
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 41.8
2301
Female, age 85, both hemispheres
46.3
1984
Male, age 76, both hemispheres
43.3
2090
Male, age 80, both hemispheres
41.3
2188
Female, age 91, both hemispheres
36.4
Dorsal cochlear nucleus nTPM: 58.3
2802
Male, age 74, right hemisphere
74.5
2370
Male, age 61, both hemispheres
62.6
2378
Male, age 80, both hemispheres
54.9
2058
Male, age 76, both hemispheres
52.9
2187
Female, age 91, both hemispheres
46.4
Dorsal tegmental nucleus nTPM: 58.7
1936
Male, age 76, left hemisphere
60.2
2083
Male, age 80, both hemispheres
60.1
2326
Male, age 74, both hemispheres
59.1
2358
Male, age 61, both hemispheres
55.5
Dorsolateral tegmental area nTPM: 53.1
2654
Male, age 80, both hemispheres
62.2
2751
Female, age 85, both hemispheres
52.9
2360
Male, age 74, both hemispheres
51.5
2337
Male, age 61, both hemispheres
50.7
2141
Male, age 76, both hemispheres
48.1
Kolliker-Fuse nucleus nTPM: 60.6
2315
Male, age 76, right hemisphere
97.1
2163
Male, age 80, both hemispheres
48.4
2793
Female, age 91, left hemisphere
36.2
Lateral lemniscal nuclei nTPM: 37.4
2453
Male, age 74, right hemisphere
42.2
2169
Male, age 76, both hemispheres
39.3
2036
Male, age 80, both hemispheres
36.5
2746
Female, age 85, left hemisphere
34.9
2320
Female, age 91, left hemisphere
34.0
Lateral parabrachial nucleus nTPM: 51.7
2792
Male, age 76, both hemispheres
59.8
2139
Female, age 85, right hemisphere
53.0
2790
Male, age 61, both hemispheres
50.7
2013
Male, age 80, both hemispheres
43.2
Lateral vestibular nucleus nTPM: 52.6
2311
Male, age 80, both hemispheres
53.0
2184
Male, age 76, both hemispheres
52.3
Locus coeruleus nTPM: 57.1
2014
Male, age 55, unknown
60.4
2720
Male, age 74, both hemispheres
59.1
1980
Male, age 76, both hemispheres
59.0
2788
Male, age 74, unknown
58.6
2123
Female, age 91, both hemispheres
57.6
2317
Female, age 72, unknown
56.8
2162
Male, age 80, both hemispheres
48.4
Medial parabrachial nucleus nTPM: 49.2
2786
Male, age 76, both hemispheres
55.1
2156
Male, age 61, both hemispheres
53.2
2463
Female, age 85, right hemisphere
47.3
2854
Male, age 80, both hemispheres
45.2
2170
Female, age 91, both hemispheres
45.0
Medial periolivary nuclei nTPM: 39.5
2791
Male, age 74, right hemisphere
49.4
2063
Male, age 76, both hemispheres
41.5
2458
Female, age 91, both hemispheres
36.4
2081
Male, age 80, both hemispheres
35.6
2171
Female, age 85, both hemispheres
34.5
Motor facial nucleus nTPM: 43.9
2795
Female, age 91, both hemispheres
69.7
2126
Male, age 61, both hemispheres
45.1
2365
Male, age 74, right hemisphere
44.4
2062
Male, age 76, both hemispheres
43.4
2697
Female, age 85, both hemispheres
31.0
2327
Male, age 80, both hemispheres
29.9
Motor trigeminal nucleus nTPM: 42.7
2309
Male, age 76, both hemispheres
51.6
2335
Male, age 61, both hemispheres
47.8
2560
Male, age 74, both hemispheres
43.9
2321
Female, age 91, both hemispheres
36.4
2079
Male, age 80, both hemispheres
33.9
Nuclei of the trapezoid body nTPM: 38.5
2368
Female, age 91, both hemispheres
49.9
1983
Male, age 76, both hemispheres
42.2
2166
Male, age 80, both hemispheres
37.3
2735
Female, age 85, both hemispheres
35.1
2159
Male, age 61, both hemispheres
28.2
Nucleus raphe magnus nTPM: 35.7
2455
Male, age 74, both hemispheres
46.4
2051
Male, age 76, both hemispheres
43.9
2328
Male, age 80, both hemispheres
37.4
2459
Female, age 91, both hemispheres
35.0
2160
Male, age 61, both hemispheres
25.9
2172
Female, age 85, both hemispheres
25.6
Paramedian reticular nucleus nTPM: 46.2
2052
Male, age 76, both hemispheres
51.0
2057
Male, age 80, both hemispheres
48.6
2313
Male, age 61, both hemispheres
45.6
2050
Female, age 85, both hemispheres
39.7
Pedunculopontine tegmental nucleus nTPM: 56.7
2334
Male, age 80, both hemispheres
61.0
2338
Male, age 61, both hemispheres
57.1
1921
Female, age 85, both hemispheres
52.1
Pontine nuclei nTPM: 33.5
1863
Male, age 55, unknown
40.9
2109
Female, age 72, unknown
37.4
1968
Male, age 76, left hemisphere
37.1
2115
Male, age 80, left hemisphere
35.1
2319
Female, age 91, both hemispheres
34.4
2454
Male, age 74, left hemisphere
31.9
2787
Female, age 85, both hemispheres
27.8
2727
Male, age 61, right hemisphere
23.3
Pontine raphe nucleus nTPM: 49.1
2853
Male, age 76, midline
59.4
2122
Female, age 85, midline
38.8
Posteroventral cochlear nucleus nTPM: 46.7
2371
Male, age 61, both hemispheres
63.6
2070
Male, age 76, both hemispheres
47.7
2752
Female, age 85, both hemispheres
46.4
2341
Male, age 80, both hemispheres
42.5
2135
Female, age 91, both hemispheres
33.5
Principal sensory trigeminal nucleus nTPM: 38.4
2324
Male, age 76, both hemispheres
59.9
2008
Male, age 80, left hemisphere
32.7
2367
Female, age 91, left hemisphere
32.1
2158
Male, age 61, both hemispheres
28.9
Reticular pontine nucleus, caudal nTPM: 40.0
2092
Male, age 76, both hemispheres
47.1
2559
Male, age 74, both hemispheres
41.2
2457
Female, age 91, both hemispheres
40.1
2332
Male, age 80, right hemisphere
31.6
Reticular pontine nucleus, oral nTPM: 43.9
1939
Male, age 80, both hemispheres
58.1
2167
Male, age 76, both hemispheres
54.2
2012
Female, age 85, both hemispheres
39.7
2366
Female, age 91, both hemispheres
35.0
2361
Male, age 74, both hemispheres
32.4
Reticulotegmental nucleus nTPM: 49.6
2333
Male, age 80, both hemispheres
54.1
2452
Male, age 74, both hemispheres
51.2
2322
Female, age 91, both hemispheres
50.8
2325
Male, age 76, both hemispheres
42.4
Spinal trigeminal nucleus, oral nTPM: 47.0
1978
Male, age 76, both hemispheres
48.1
2164
Male, age 80, both hemispheres
46.9
2737
Female, age 85, both hemispheres
45.9
Subcoeruleus area nTPM: 50.1
2451
Male, age 74, both hemispheres
60.5
2369
Female, age 85, left hemisphere
54.0
2323
Female, age 91, left hemisphere
50.4
1958
Male, age 80, both hemispheres
47.6
2089
Male, age 76, left hemisphere
38.1
Superior olive nTPM: 38.1
2364
Male, age 74, right hemisphere
45.4
2020
Male, age 76, both hemispheres
40.1
2561
Female, age 91, both hemispheres
37.7
2329
Male, age 80, right hemisphere
35.8
1875
Female, age 85, both hemispheres
31.3
Ventral periolivary nuclei nTPM: 38.2
2023
Male, age 76, both hemispheres
40.9
2130
Female, age 85, both hemispheres
40.4
2165
Male, age 80, both hemispheres
38.9
2794
Female, age 91, left hemisphere
32.4
Ventrolateral tegmental area, A5 NE cell group nTPM: 45.7
2359
Male, age 61, both hemispheres
59.0
2456
Female, age 91, both hemispheres
46.6
2840
Female, age 85, both hemispheres
44.4
1959
Male, age 76, both hemispheres
42.4
2449
Male, age 74, both hemispheres
41.1
2161
Male, age 80, both hemispheres
40.5
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
The Human Protein Atlas project is funded
