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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Mouse brain, Intensity
Thalamusi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

75.100
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:92.5 nTPM
FANTOM5:93.9 Scaled Tags Per Million
Pig:57.2 nTPM
Mouse:13.6 nTPM

THALAMUS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

, antibody HPA006563
Thalamus mean intensity 75.100
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

FRONT BACK
Medial geniculate nucleus 64.301
Parafascicular thalamic nucleus 38.164
Pregeniculate nucleus 47.067
Stria terminalis 53.326
Zona incerta 69.140
Anterodorsal thalamic nucleus 33.811
Reticular thalamic nucleus 32.463
Vental anterior thalamic nucleus -
Medial habenular nucleus 66.476
Laterodorsal thalamic area 62.968
Paraventricular thalamic nucleus 75.100
Central medial thalamic area 64.675
Ventral lateral thalamic area -
Ventral medial thalamic area 62.837
Lateral habenulal nucleus 51.144
Ventral posterior thalamus 51.117
Anterior pretactal nucleus 40.985
Retromammillary nucleus 63.090

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

92.5
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 49.1
2497 Male, age 66, unknown 58.8
2032 Female, age 42, unknown 46.5
2396 Male, age 61, right hemisphere 41.9
Centromedial thalamic nucleus
nTPM: 67.2
2279 Female, age 85, left hemisphere 70.5
2401 Male, age 76, right hemisphere 63.9
Habenula
nTPM: 57.8
2276 Male, age 66, unknown 66.0
2252 Male, age 62, unknown 61.2
1957 Male, age 80, both hemispheres 57.2
2203 Male, age 61, left hemisphere 46.6
Lateral geniculate body
nTPM: 68.7
2857 Male, age 74, right hemisphere 99.5
2659 Male, age 66, unknown 79.1
2575 Female, age 94, right hemisphere 74.9
2399 Male, age 61, left hemisphere 67.5
2035 Female, age 72, unknown 67.3
2841 Male, age 80, both hemispheres 60.7
1953 Male, age 62, unknown 50.9
2106 Female, age 67, right hemisphere 49.9
Lateral thalamic nuclei
nTPM: 69.3
2573 Female, age 94, left hemisphere 83.9
2661 Female, age 72, unknown 78.1
2577 Male, age 74, both hemispheres 74.3
2765 Female, age 67, both hemispheres 57.2
1903 Male, age 76, left hemisphere 52.7
Medial dorsal thalamic nucleus
nTPM: 70.5
2572 Female, age 94, right hemisphere 101.3
2402 Female, age 67, both hemispheres 87.3
2492 Male, age 75, right hemisphere 85.9
2576 Male, age 74, both hemispheres 79.6
1810 Male, age 48, unknown 74.5
2026 Male, age 62, unknown 67.7
2498 Male, age 66, unknown 67.0
1859 Male, age 76, both hemispheres 66.3
2283 Male, age 80, right hemisphere 65.7
2039 Female, age 72, unknown 62.2
2660 Female, age 72, unknown 57.4
1971 Male, age 61, right hemisphere 53.4
1930 Female, age 42, unknown 48.8
Medial geniculate body
nTPM: 82.1
2571 Male, age 75, right hemisphere 124.4
2650 Female, age 94, left hemisphere 97.3
2657 Male, age 74, right hemisphere 78.9
2217 Female, age 72, unknown 75.3
2049 Male, age 76, both hemispheres 73.3
2207 Male, age 80, right hemisphere 68.9
1811 Female, age 42, unknown 56.4
Nucleus reuniens
nTPM: 56.5
2205 Male, age 80, left hemisphere 69.6
2210 Female, age 85, left hemisphere 53.0
2212 Female, age 67, left hemisphere 46.9
Nucleus rhomboideus
nTPM: 62.7
2213 Female, age 67, left hemisphere 65.7
2206 Male, age 80, both hemispheres 65.6
2280 Female, age 85, left hemisphere 56.7
Posterior thalamic nucleus
nTPM: 92.5
2649 Female, age 94, both hemispheres 124.5
2655 Male, age 74, right hemisphere 105.0
2495 Female, age 67, right hemisphere 85.3
2266 Male, age 76, right hemisphere 55.1
Pulvinar
nTPM: 70.0
2724 Male, age 74, right hemisphere 91.3
2582 Female, age 72, unknown 79.5
2499 Male, age 66, unknown 75.3
2496 Female, age 67, right hemisphere 72.7
2398 Male, age 61, left hemisphere 67.1
1932 Male, age 80, right hemisphere 64.8
1929 Male, age 48, unknown 64.5
1972 Male, age 62, unknown 62.4
2214 Male, age 76, right hemisphere 62.0
1899 Female, age 42, unknown 60.5
Subthalamic nucleus
nTPM: 60.9
2124 Male, age 62, unknown 67.9
2779 Female, age 42, unknown 67.3
2056 Female, age 72, unknown 65.7
2216 Male, age 48, unknown 63.6
2282 Male, age 61, both hemispheres 63.3
2275 Male, age 66, unknown 56.1
2406 Female, age 72, unknown 54.6
2658 Male, age 74, both hemispheres 48.9
Ventral posterolateral thalamic nucleus
nTPM: 71.0
2570 Male, age 75, right hemisphere 99.3
2197 Male, age 80, both hemispheres 75.8
2581 Female, age 72, unknown 66.8
2578 Male, age 74, both hemispheres 65.2
2397 Male, age 61, right hemisphere 61.8
2740 Male, age 76, right hemisphere 57.2
Ventral posteromedial thalamic nucleus
nTPM: 70.8
2281 Male, age 75, right hemisphere 84.1
2127 Male, age 76, right hemisphere 72.6
2653 Male, age 74, both hemispheres 70.3
2758 Male, age 80, both hemispheres 70.0
2202 Male, age 61, left hemisphere 57.0
Ventral thalamic nuclei
nTPM: 65.9
2580 Male, age 66, unknown 75.2
2204 Male, age 80, both hemispheres 74.7
2291 Female, age 72, unknown 73.5
2858 Female, age 72, unknown 70.6
2285 Male, age 62, unknown 66.1
2652 Male, age 74, left hemisphere 64.2
1845 Male, age 48, unknown 62.1
1860 Male, age 76, both hemispheres 60.8
1912 Female, age 42, unknown 45.9
Zona incerta
nTPM: 54.8
2208 Male, age 80, right hemisphere 74.9
2403 Male, age 62, unknown 61.3
2663 Female, age 72, unknown 59.3
2215 Male, age 66, unknown 41.3
2822 Male, age 74, right hemisphere 37.3

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

93.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 93.9
FF:10154-103A1 76 years, female 93.9

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

57.2
Pig sample Sample description nTPM
Thalamus
nTPM: 57.2
Samples: 4

Max nTPM: 60.2
Min nTPM: 52.6
Sample A Female 57.7
Sample B Female 52.6
Sample C Male 58.4
Sample D Male 60.2

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

13.6
Mouse sample Sample description nTPM
Thalamus
nTPM: 13.6
Samples: 4

Max nTPM: 15.3
Min nTPM: 12.1
Sample A Male 12.1
Sample B Male 15.3
Sample C Female 13.6
Sample D Female 13.4

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