We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
ATP5PF
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • ATP5PF
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:259.4 nTPM
HPA Brain:76.2 nTPM
GTEx:259.4 nTPM
FANTOM5:253.1 Scaled Tags Per Million
Pig:35.9 nTPM
Mouse:295.8 nTPM
Allen mouse:1.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

76.2
Sample id Sample description nTPM
Amygdala
nTPM: 76.2
2814 Male, age 76, right hemisphere 96.5
2514 Male, age 75, right hemisphere 78.4
2695 Female, age 67, right hemisphere 77.1
1987 Female, age 91, left hemisphere 66.8
2517 Female, age 94, left hemisphere 62.2
Basal amygdala
nTPM: 63.7
2609 Male, age 75, right hemisphere 77.4
1955 Male, age 76, both hemispheres 73.5
2243 Female, age 91, right hemisphere 71.2
2110 Male, age 80, left hemisphere 63.5
2685 Female, age 94, left hemisphere 60.0
2827 Female, age 67, right hemisphere 36.9
Central amygdala
nTPM: 66.9
1905 Male, age 76, both hemispheres 90.4
2826 Female, age 94, left hemisphere 73.8
2239 Male, age 80, left hemisphere 61.5
2515 Male, age 75, right hemisphere 56.1
2701 Female, age 91, right hemisphere 52.7
Corticomedial amygdala
nTPM: 71.1
2240 Male, age 76, both hemispheres 95.9
2242 Female, age 91, right hemisphere 77.8
2429 Female, age 94, left hemisphere 75.4
2428 Male, age 75, right hemisphere 70.6
2829 Male, age 80, left hemisphere 67.4
2535 Female, age 67, right hemisphere 39.7
Lateral amygdala
nTPM: 62.2
2534 Female, age 94, left hemisphere 84.1
1883 Male, age 76, both hemispheres 81.6
2516 Male, age 75, right hemisphere 80.1
2255 Female, age 91, right hemisphere 46.9
2830 Female, age 67, right hemisphere 40.4
2256 Male, age 80, left hemisphere 40.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

259.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 259.4
Samples: 152

Max nTPM: 1027.4
Min nTPM: 123.6
Std nTPM: 105.4
Median nTPM: 231.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1027.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 663.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 596.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 579.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 537.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 533.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 484.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 421.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 393.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 377.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 373.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 370.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 370.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 368.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 366.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 360.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 358.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 338.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 334.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 329.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 325.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 322.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 313.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 311.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 308.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 305.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 303.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 303.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 302.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 301.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 301.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 299.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 296.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 295.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 294.4
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 291.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 282.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 276.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 276.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 276.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 275.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 270.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 267.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 267.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 266.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 266.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 263.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 262.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 262.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 261.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 261.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 261.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 260.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 259.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 259.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 258.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 257.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 256.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 251.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 250.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 249.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 249.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 249.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 246.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 244.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 244.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 241.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 241.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 240.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 238.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 238.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 236.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 235.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 234.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 233.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 231.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 231.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 231.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 230.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 230.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 230.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 228.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 228.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 226.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 225.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 225.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 225.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 224.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 223.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 222.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 219.7
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 218.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 217.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 217.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 217.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 217.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 216.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 216.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 216.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 215.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 215.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 214.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 214.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 213.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 212.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 211.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 211.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 209.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 209.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 208.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 207.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 207.7
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 207.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 206.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 206.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 206.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 204.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 203.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 202.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 200.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 199.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 199.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 199.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 197.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 196.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 196.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 195.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 194.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 193.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 191.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 191.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 187.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 184.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 182.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 181.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 178.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 177.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 176.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 174.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 171.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 169.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 168.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 168.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 166.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 164.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 158.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 158.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 153.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 150.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 144.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 133.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 123.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

253.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 253.1
FF:10151-102I7 76 years, female 253.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

35.9
Pig sample Sample description nTPM
Amygdala
nTPM: 35.9
Samples: 4

Max nTPM: 44.4
Min nTPM: 27.4
Sample A Female 44.4
Sample B Female 38.6
Sample C Male 33.0
Sample D Male 27.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

295.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 295.9
Samples: 4

Max nTPM: 325.3
Min nTPM: 279.7
Sample A Male 291.3
Sample B Male 287.1
Sample C Female 325.3
Sample D Female 279.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.0
124 Antisense, RP_Baylor_102641, Mouse strain C57BL/6J (56 days, male) 1.0
125 Antisense, RP_Baylor_102641, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org