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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
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Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:241.8 nTPM
GTEx:241.8 nTPM
FANTOM5:303.4 Scaled Tags Per Million
Pig:25.8 nTPM
Mouse:290.0 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

241.8
GTEx sample id Sample description nTPM
Retina
Average nTPM: 241.8
Samples: 105

Max nTPM: 365.1
Min nTPM: 162.3
Std nTPM: 42.8
Median nTPM:
162_1 79 years, female 365.1
490_1 67 years, female 356.2
491_1 89 years, female 350.9
413_1 59 years, female 324.3
142_1 61 years, female 320.7
414_1 84 years, female 317.3
415_1 77 years, female 315.6
501_1 88 years, male 314.4
17_1 71 years, male 306.7
466_1 57 years, female 305.4
153_1 70 years, female 301.5
375_1 74 years, female 297.2
315_1 62 years, female 293.4
265_1 87 years, male 293.3
81_1 67 years, male 284.4
396_1 62 years, male 282.9
139_1 64 years, female 282.3
149_1 88 years, male 281.4
4_1 88 years, female 279.7
126_1 63 years, male 279.3
35_1 74 years, female 278.0
229_1 69 years, female 274.0
499_1 55 years, female 270.5
217_1 76 years, male 269.4
246_1 77 years, male 268.6
120_1 70 years, female 267.6
313_1 79 years, female 266.4
18_1 88 years, male 264.8
379_1 60 years, male 264.6
41_1 94 years, female 262.2
32_1 67 years, male 260.3
324_1 76 years, male 257.8
495_1 57 years, female 256.9
2_1 77 years, female 256.7
137_1 83 years, male 255.8
145_1 84 years, male 255.1
117_1 61 years, male 254.9
43_1 64 years, female 254.7
89_1 63 years, male 254.6
254_1 77 years, female 252.6
468_1 89 years, male 251.5
6_1 73 years, female 251.1
389_1 86 years, female 250.4
119_1 70 years, female 249.9
115_1 83 years, male 249.8
9_1 66 years, female 248.7
109_1 81 years, female 248.1
447_1 81 years, male 247.4
404_1 82 years, female 246.3
386_1 76 years, male 243.3
376_1 75 years, female 242.3
384_1 83 years, male 239.3
237_1 82 years, male 238.1
288_1 66 years, female 235.2
377_1 82 years, female 234.9
518_1 75 years, female 234.6
189_1 76 years, male 233.3
425_1 59 years, female 232.2
99_1 64 years, male 230.9
42_1 85 years, male 230.4
452_1 88 years, female 230.2
394_1 75 years, female 229.7
347_1 72 years, male 228.2
243_1 75 years, male 227.3
322_1 76 years, male 226.2
335_1 73 years, female 225.7
480_1 63 years, male 225.5
354_1 81 years, female 224.6
316_1 62 years, male 224.5
266_1 85 years, male 224.2
308_1 70 years, female 223.0
307_1 66 years, female 222.0
526_1 61 years, male 220.7
321_1 62 years, female 219.8
319_1 81 years, male 217.4
350_1 84 years, female 213.7
405_1 91 years, male 213.4
311_1 78 years, male 212.3
349_1 83 years, male 209.2
348_1 84 years, male 207.5
286_1 68 years, female 206.9
264_1 73 years, female 205.0
314_1 67 years, male 203.4
406_1 79 years, male 203.1
506_1 65 years, male 201.8
503_1 68 years, male 200.5
352_1 62 years, male 199.4
355_1 70 years, female 199.4
517_1 88 years, male 197.8
177_1 74 years, male 193.3
218_1 71 years, female 193.3
173_1 67 years, male 191.3
172_1 72 years, female 190.0
353_1 82 years, female 187.4
351_1 91 years, male 185.5
318_1 68 years, male 185.4
251_1 78 years, male 185.0
295_1 61 years, female 184.9
163_1 78 years, male 184.5
320_1 89 years, female 184.2
356_1 87 years, female 175.9
291_1 76 years, male 172.9
293_1 68 years, female 168.3
317_1 60 years, male 162.4
292_1 71 years, male 162.3
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

303.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 303.4
FF:10030-101E3 24-65 years, mixed 303.4

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

25.8
Pig sample Sample description nTPM
Retina
nTPM: 25.8
Samples: 4

Max nTPM: 28.4
Min nTPM: 23.2
Sample A Female 23.2
Sample B Female 28.4
Sample C Male 26.3
Sample D Male 25.3

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

290.0
Mouse sample Sample description nTPM
Retina
nTPM: 290.0
Samples: 4

Max nTPM: 349.3
Min nTPM: 246.2
Sample A Male 311.2
Sample B Male 246.2
Sample C Female 349.3
Sample D Female 253.4

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