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SLC25A28
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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:68.8 nTPM
HPA Brain:27.8 nTPM
GTEx:68.8 nTPM
FANTOM5:29.2 Scaled Tags Per Million
Pig:29.1 nTPM
Mouse:12.3 nTPM

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

27.8
Sample id Sample description nTPM
Amygdala
nTPM: 26.2
2814 Male, age 76, right hemisphere 30.4
2695 Female, age 67, right hemisphere 27.7
1987 Female, age 91, left hemisphere 25.1
2517 Female, age 94, left hemisphere 24.5
2514 Male, age 75, right hemisphere 23.2
Basal amygdala
nTPM: 27.7
2609 Male, age 75, right hemisphere 31.4
1955 Male, age 76, both hemispheres 28.2
2243 Female, age 91, right hemisphere 27.8
2685 Female, age 94, left hemisphere 27.5
2827 Female, age 67, right hemisphere 27.0
2110 Male, age 80, left hemisphere 24.4
Central amygdala
nTPM: 27.8
2515 Male, age 75, right hemisphere 30.1
2239 Male, age 80, left hemisphere 28.3
2701 Female, age 91, right hemisphere 27.7
2826 Female, age 94, left hemisphere 26.9
1905 Male, age 76, both hemispheres 26.0
Corticomedial amygdala
nTPM: 26.5
2429 Female, age 94, left hemisphere 29.3
2240 Male, age 76, both hemispheres 27.3
2535 Female, age 67, right hemisphere 26.2
2829 Male, age 80, left hemisphere 25.7
2242 Female, age 91, right hemisphere 25.4
2428 Male, age 75, right hemisphere 25.3
Lateral amygdala
nTPM: 27.2
2516 Male, age 75, right hemisphere 29.2
2255 Female, age 91, right hemisphere 28.3
1883 Male, age 76, both hemispheres 27.8
2534 Female, age 94, left hemisphere 27.3
2256 Male, age 80, left hemisphere 26.5
2830 Female, age 67, right hemisphere 24.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

68.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 68.8
Samples: 152

Max nTPM: 141.5
Min nTPM: 38.8
Std nTPM: 16.7
Median nTPM: 66.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 141.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 125.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 110.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 105.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 101.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 100.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 97.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 97.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 96.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 95.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 94.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 93.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 93.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 91.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 90.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 89.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 87.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 87.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 87.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 86.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 86.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 86.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 86.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 85.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 85.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 84.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 84.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 84.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 83.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 82.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 82.5
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 81.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 80.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 80.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 80.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 79.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 79.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 79.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 78.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 78.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 77.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 77.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 77.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 77.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 77.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 77.1
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 77.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 77.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 76.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 76.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 75.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 75.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 74.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 74.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 74.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 73.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 73.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 73.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 73.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 72.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 72.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 72.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 71.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 71.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 70.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 70.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 69.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 69.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 68.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 68.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 67.3
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 67.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 66.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 66.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 66.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 66.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 66.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 64.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 64.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 64.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 63.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 63.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 63.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 62.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 62.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 62.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 62.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 62.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 61.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 61.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 61.0
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 60.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 60.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 59.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 59.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 59.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 59.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 59.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 59.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 59.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 58.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 58.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 58.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 58.3
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 58.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 58.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 57.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 57.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 57.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 57.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 57.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 57.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 57.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 56.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 56.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 56.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 56.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 56.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 55.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 55.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 55.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 55.4
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 55.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 54.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 54.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 54.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 53.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 53.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 53.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 51.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 51.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 51.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 50.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 50.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 50.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 49.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 49.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 49.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 49.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 49.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 48.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 48.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 48.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 48.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 48.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 46.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 45.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 44.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 44.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 41.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 40.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 38.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

29.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 29.2
FF:10151-102I7 76 years, female 29.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

29.1
Pig sample Sample description nTPM
Amygdala
nTPM: 29.1
Samples: 4

Max nTPM: 32.5
Min nTPM: 27.6
Sample A Female 32.5
Sample B Female 27.6
Sample C Male 28.5
Sample D Male 27.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

12.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 12.4
Samples: 4

Max nTPM: 14.6
Min nTPM: 9.6
Sample A Male 12.5
Sample B Male 12.7
Sample C Female 14.6
Sample D Female 9.6

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