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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:148.1 nTPM
HPA Brain:248.8 nTPM
GTEx:148.1 nTPM
FANTOM5:373.0 Scaled Tags Per Million
Pig:376.7 nTPM
Mouse:1493.3 nTPM
Allen mouse:25.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

248.8
Sample id Sample description nTPM
Amygdala
nTPM: 231.0
2814 Male, age 76, right hemisphere 300.3
2514 Male, age 75, right hemisphere 267.1
1987 Female, age 91, left hemisphere 233.7
2517 Female, age 94, left hemisphere 230.7
2695 Female, age 67, right hemisphere 123.1
Basal amygdala
nTPM: 245.6
2110 Male, age 80, left hemisphere 353.8
2685 Female, age 94, left hemisphere 267.7
2243 Female, age 91, right hemisphere 265.7
1955 Male, age 76, both hemispheres 262.5
2609 Male, age 75, right hemisphere 231.9
2827 Female, age 67, right hemisphere 92.0
Central amygdala
nTPM: 211.8
2239 Male, age 80, left hemisphere 264.5
1905 Male, age 76, both hemispheres 257.4
2701 Female, age 91, right hemisphere 205.4
2826 Female, age 94, left hemisphere 190.7
2515 Male, age 75, right hemisphere 141.1
Corticomedial amygdala
nTPM: 248.8
2829 Male, age 80, left hemisphere 324.8
2429 Female, age 94, left hemisphere 313.2
2240 Male, age 76, both hemispheres 270.7
2242 Female, age 91, right hemisphere 227.8
2428 Male, age 75, right hemisphere 188.8
2535 Female, age 67, right hemisphere 167.7
Lateral amygdala
nTPM: 192.4
1883 Male, age 76, both hemispheres 274.6
2534 Female, age 94, left hemisphere 227.2
2255 Female, age 91, right hemisphere 209.8
2516 Male, age 75, right hemisphere 203.9
2256 Male, age 80, left hemisphere 177.5
2830 Female, age 67, right hemisphere 61.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

148.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 148.1
Samples: 152

Max nTPM: 342.9
Min nTPM: 15.4
Std nTPM: 74.4
Median nTPM: 134.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 342.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 340.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 333.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 330.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 295.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 293.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 280.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 270.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 270.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 266.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 262.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 260.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 257.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 257.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 257.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 247.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 245.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 242.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 239.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 236.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 235.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 232.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 232.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 229.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 229.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 228.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 224.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 221.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 220.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 220.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 220.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 220.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 219.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 213.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 212.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 210.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 206.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 204.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 202.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 202.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 201.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 199.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 199.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 196.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 195.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 190.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 189.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 186.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 186.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 186.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 180.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 180.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 177.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 176.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 175.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 173.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 173.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 171.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 167.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 164.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 158.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 158.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 158.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 158.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 151.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 147.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 141.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 141.1
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 139.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 137.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 137.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 137.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 136.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 136.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 135.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 134.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 134.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 132.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 131.0
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 130.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 129.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 129.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 129.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 129.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 129.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 126.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 126.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 125.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 125.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 122.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 120.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 118.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 118.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 115.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 113.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 111.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 111.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 109.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 108.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 105.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 104.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 103.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 103.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 102.4
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 102.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 100.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 96.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 95.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 94.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 93.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 90.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 89.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 89.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 89.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 88.5
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 88.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 88.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 86.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 85.6
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 85.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 84.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 77.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 77.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 76.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 74.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 73.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 72.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 71.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 67.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 65.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 63.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 62.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 62.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 61.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 59.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 58.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 58.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 57.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 57.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 55.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 54.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 54.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 52.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 47.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 45.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 43.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 42.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 38.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 33.7
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 18.7
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 16.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 15.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

373.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 373.0
FF:10151-102I7 76 years, female 373.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

376.7
Pig sample Sample description nTPM
Amygdala
nTPM: 376.7
Samples: 4

Max nTPM: 486.8
Min nTPM: 335.4
Sample A Female 486.8
Sample B Female 335.4
Sample C Male 342.3
Sample D Male 342.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1493.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 1493.3
Samples: 4

Max nTPM: 1695.0
Min nTPM: 1344.0
Sample A Male 1344.0
Sample B Male 1446.3
Sample C Female 1695.0
Sample D Female 1487.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

25.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 25.4
72718 Antisense, RP_040407_01_H11, Mouse strain C57BL/6J (56 days, male) 25.4

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