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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:171.1 nTPM
HPA Brain:114.4 nTPM
GTEx:171.1 nTPM
FANTOM5:125.7 Scaled Tags Per Million
Pig:15.2 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

114.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 92.4
1981 Female, age 72, midline 118.6
2565 Male, age 75, midline 92.5
2194 Female, age 79, both hemispheres 91.1
2048 Male, age 55, midline 85.0
2816 Male, age 47, midline 74.9
Cervical spinal cord, dorsal horn
nTPM: 114.4
2173 Female, age 72, unknown 146.4
2069 Male, age 47, both hemispheres 126.0
2296 Male, age 66, both hemispheres 121.0
2297 Male, age 75, both hemispheres 109.1
1877 Male, age 55, unknown 103.1
2721 Male, age 90, both hemispheres 80.9
Cervical spinal cord, ventral horn
nTPM: 104.7
2480 Male, age 75, both hemispheres 138.5
2068 Male, age 55, unknown 113.6
2098 Female, age 72, unknown 106.7
2809 Male, age 90, both hemispheres 102.2
2295 Male, age 66, both hemispheres 88.0
2820 Female, age 79, both hemispheres 79.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

171.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 171.1
Samples: 159

Max nTPM: 309.4
Min nTPM: 74.0
Std nTPM: 47.7
Median nTPM: 165.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 309.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 306.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 298.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 296.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 296.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 286.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 284.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 261.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 247.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 246.0
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 242.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 241.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 238.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 235.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 231.7
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 228.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 227.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 227.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 225.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 224.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 224.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 223.5
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 223.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 220.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 219.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 219.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 216.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 216.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 215.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 214.3
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 213.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 213.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 212.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 208.2
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 205.7
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 204.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 204.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 203.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 201.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 199.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 199.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 197.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 196.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 194.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 194.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 194.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 193.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 192.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 192.4
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 190.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 190.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 190.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 189.9
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 189.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 189.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 184.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 184.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 183.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 182.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 182.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 181.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 181.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 180.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 178.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 177.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 177.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 177.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 177.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 175.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 173.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 172.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 172.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 172.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 170.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 170.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 169.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 167.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 167.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 165.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 165.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 163.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 162.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 161.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 160.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 160.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 160.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 159.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 158.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 157.4
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 157.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 156.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 155.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 155.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 155.1
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 154.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 154.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 153.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 151.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 150.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 150.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 148.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 147.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 147.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 147.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 145.5
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 144.4
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 144.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 142.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 142.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 141.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 141.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 140.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 139.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 138.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 137.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 134.8
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 134.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 134.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 134.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 134.4
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 133.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 133.2
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 133.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 132.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 132.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 132.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 130.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 130.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 129.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 129.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 127.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 127.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 126.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 124.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 123.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 123.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 123.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 122.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 120.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 120.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 119.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 118.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 116.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 115.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 114.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 114.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 112.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 109.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 109.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 109.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 107.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 107.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 106.5
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 105.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 101.2
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 92.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 77.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 76.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 74.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

125.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 125.7
FF:10181-103D1 60 years, female 157.8
FF:10159-103A6 76 years, female 93.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

15.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 11.9
Samples: 4

Max nTPM: 12.9
Min nTPM: 11.1
Sample A Female 12.9
Sample B Female 12.0
Sample C Male 11.7
Sample D Male 11.1
Ventral spinal cord
nTPM: 15.2
Samples: 4

Max nTPM: 17.8
Min nTPM: 13.3
Sample A Female 14.5
Sample B Female 17.8
Sample C Male 15.1
Sample D Male 13.3

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