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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:248.0 nTPM
HPA Brain:197.8 nTPM
GTEx:248.0 nTPM
FANTOM5:556.7 Scaled Tags Per Million
Mouse:618.5 nTPM
Allen mouse:28.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

197.8
Sample id Sample description nTPM
Amygdala
nTPM: 197.8
2514 Male, age 75, right hemisphere 232.4
2814 Male, age 76, right hemisphere 201.9
1987 Female, age 91, left hemisphere 189.9
2517 Female, age 94, left hemisphere 186.8
2695 Female, age 67, right hemisphere 177.9
Basal amygdala
nTPM: 154.5
2609 Male, age 75, right hemisphere 180.0
2243 Female, age 91, right hemisphere 170.4
2110 Male, age 80, left hemisphere 167.0
1955 Male, age 76, both hemispheres 155.8
2685 Female, age 94, left hemisphere 141.3
2827 Female, age 67, right hemisphere 112.5
Central amygdala
nTPM: 177.6
2515 Male, age 75, right hemisphere 199.0
2826 Female, age 94, left hemisphere 191.1
1905 Male, age 76, both hemispheres 182.1
2239 Male, age 80, left hemisphere 166.2
2701 Female, age 91, right hemisphere 149.7
Corticomedial amygdala
nTPM: 177.7
2428 Male, age 75, right hemisphere 204.0
2829 Male, age 80, left hemisphere 194.2
2429 Female, age 94, left hemisphere 188.8
2242 Female, age 91, right hemisphere 183.6
2240 Male, age 76, both hemispheres 173.7
2535 Female, age 67, right hemisphere 122.1
Lateral amygdala
nTPM: 155.8
2516 Male, age 75, right hemisphere 204.8
2534 Female, age 94, left hemisphere 191.3
1883 Male, age 76, both hemispheres 169.6
2255 Female, age 91, right hemisphere 127.3
2256 Male, age 80, left hemisphere 122.1
2830 Female, age 67, right hemisphere 119.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

248.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 248.0
Samples: 152

Max nTPM: 666.4
Min nTPM: 43.9
Std nTPM: 97.1
Median nTPM: 228.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 666.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 522.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 480.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 467.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 461.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 461.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 460.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 436.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 432.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 421.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 377.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 369.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 368.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 367.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 366.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 366.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 360.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 359.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 358.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 352.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 351.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 349.9
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 345.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 342.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 340.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 340.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 336.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 334.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 324.4
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 323.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 320.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 316.7
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 316.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 315.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 314.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 313.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 311.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 310.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 309.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 309.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 305.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 301.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 300.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 300.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 299.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 299.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 296.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 295.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 292.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 288.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 285.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 283.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 282.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 282.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 278.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 274.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 273.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 271.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 268.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 265.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 261.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 260.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 257.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 254.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 252.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 249.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 248.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 237.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 235.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 235.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 235.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 235.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 234.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 233.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 232.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 229.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 228.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 225.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 223.0
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 221.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 220.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 218.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 217.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 217.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 216.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 215.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 213.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 213.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 213.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 213.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 210.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 209.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 207.9
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 206.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 206.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 202.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 201.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 201.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 200.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 199.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 196.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 195.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 194.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 193.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 191.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 190.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 190.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 184.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 183.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 183.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 182.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 181.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 180.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 179.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 173.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 173.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 169.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 167.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 165.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 161.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 160.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 160.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 159.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 157.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 156.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 155.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 153.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 153.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 151.9
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 151.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 150.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 149.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 147.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 145.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 143.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 143.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 142.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 141.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 134.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 133.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 133.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 132.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 126.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 125.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 116.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 114.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 114.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 113.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 110.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 102.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 101.7
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 43.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

556.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 556.7
FF:10151-102I7 76 years, female 556.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

618.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 618.5
Samples: 4

Max nTPM: 671.0
Min nTPM: 530.5
Sample A Male 671.0
Sample B Male 659.4
Sample C Female 530.5
Sample D Female 613.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

28.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 28.7
71381013 Antisense, RP_050428_02_F12, Mouse strain C57BL/6J (56 days, male) 28.7

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