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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:134.2 nTPM
HPA Brain:46.6 nTPM
GTEx:134.2 nTPM
FANTOM5:94.6 Scaled Tags Per Million
Pig:23.0 nTPM
Mouse:33.4 nTPM
Allen mouse:2.7 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

46.6
Sample id Sample description nTPM
Amygdala
nTPM: 37.6
2695 Female, age 67, right hemisphere 54.9
2814 Male, age 76, right hemisphere 35.7
2514 Male, age 75, right hemisphere 34.1
2517 Female, age 94, left hemisphere 32.4
1987 Female, age 91, left hemisphere 30.9
Basal amygdala
nTPM: 42.3
2827 Female, age 67, right hemisphere 72.7
2609 Male, age 75, right hemisphere 40.3
2685 Female, age 94, left hemisphere 39.9
1955 Male, age 76, both hemispheres 34.4
2110 Male, age 80, left hemisphere 34.0
2243 Female, age 91, right hemisphere 32.5
Central amygdala
nTPM: 40.5
2826 Female, age 94, left hemisphere 61.6
2515 Male, age 75, right hemisphere 38.2
2701 Female, age 91, right hemisphere 35.9
2239 Male, age 80, left hemisphere 34.1
1905 Male, age 76, both hemispheres 32.9
Corticomedial amygdala
nTPM: 33.8
2535 Female, age 67, right hemisphere 40.1
2829 Male, age 80, left hemisphere 39.1
2428 Male, age 75, right hemisphere 34.2
2240 Male, age 76, both hemispheres 31.1
2242 Female, age 91, right hemisphere 29.6
2429 Female, age 94, left hemisphere 28.8
Lateral amygdala
nTPM: 46.6
2830 Female, age 67, right hemisphere 92.2
2516 Male, age 75, right hemisphere 44.2
2534 Female, age 94, left hemisphere 41.3
1883 Male, age 76, both hemispheres 34.9
2256 Male, age 80, left hemisphere 33.7
2255 Female, age 91, right hemisphere 33.6

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

134.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 134.2
Samples: 152

Max nTPM: 283.3
Min nTPM: 36.5
Std nTPM: 40.2
Median nTPM: 124.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 283.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 257.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 249.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 235.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 226.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 222.7
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 217.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 214.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 212.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 206.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 205.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 203.5
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 203.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 198.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 192.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 191.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 188.1
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 181.4
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 179.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 178.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 178.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 177.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 177.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 176.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 174.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 173.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 168.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 167.2
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 167.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 161.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 159.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 159.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 158.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 157.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 157.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 156.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 156.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 156.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 154.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 154.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 151.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 151.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 150.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 149.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 149.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 149.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 148.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 144.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 144.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 144.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 143.8
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 143.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 142.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 142.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 141.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 140.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 140.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 138.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 138.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 135.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 134.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 133.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 131.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 131.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 130.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 130.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 130.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 129.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 129.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 128.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 128.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 128.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 127.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 125.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 125.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 125.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 124.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 124.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 123.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 122.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 121.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 121.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 120.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 120.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 120.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 120.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 119.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 119.0
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 118.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 118.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 118.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 118.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 117.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 117.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 116.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 115.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 115.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 114.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 113.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 113.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 113.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 113.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 112.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 111.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 111.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 111.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 111.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 110.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 110.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 110.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 110.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 107.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 107.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 107.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 106.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 106.5
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 106.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 105.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 104.4
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 103.7
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 102.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 101.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 100.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 100.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 99.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 99.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 99.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 98.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 98.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 97.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 97.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 95.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 95.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 95.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 94.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 94.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 92.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 90.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 89.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 89.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 89.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 86.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 86.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 86.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 85.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 84.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 82.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 79.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 79.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 70.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 67.8
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 36.5
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

94.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 94.6
FF:10151-102I7 76 years, female 94.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

23.0
Pig sample Sample description nTPM
Amygdala
nTPM: 23.0
Samples: 4

Max nTPM: 31.7
Min nTPM: 17.7
Sample A Female 31.7
Sample B Female 23.0
Sample C Male 19.7
Sample D Male 17.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

33.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 33.4
Samples: 4

Max nTPM: 35.2
Min nTPM: 31.9
Sample A Male 35.2
Sample B Male 34.0
Sample C Female 32.3
Sample D Female 31.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.7
69113632 Antisense, RP_050316_02_E01, Mouse strain C57BL/6J (56 days, male) 2.7

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