MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:151.4 nTPM
HPA Brain:40.4 nTPM
GTEx:151.4 nTPM
FANTOM5:89.2 Scaled Tags Per Million
Pig:30.4 nTPM
Mouse:26.2 nTPM
Allen mouse:3.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 40.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 40.3
2666 Male, age 74, left hemisphere 55.6
2586 Male, age 75, left hemisphere 49.9
2828 Female, age 72, unknown 41.6
1827 Male, age 72, unknown 41.4
1870 Female, age 42, unknown 39.2
1833 Male, age 53, unknown 38.4
2411 Female, age 72, unknown 37.8
1830 Male, age 51, unknown 36.1
2219 Male, age 76, both hemispheres 33.0
2019 Male, age 18, unknown 30.4
Dorsal raphe nucleus
nTPM: 34.2
1828 Male, age 53, unknown 36.2
2047 Male, age 72, unknown 35.3
2016 Female, age 72, unknown 34.5
2750 Male, age 76, both hemispheres 33.9
2298 Female, age 72, unknown 30.9
Inferior colliculus
nTPM: 35.5
2849 Male, age 72, unknown 44.0
1890 Male, age 53, unknown 33.9
1848 Female, age 42, unknown 33.5
2097 Female, age 72, unknown 30.7
Median raphe nucleus
nTPM: 37.9
2220 Male, age 76, midline 37.9
Periaquaductal grey, anterior
nTPM: 35.3
1947 Male, age 18, unknown 36.0
1795 Male, age 51, unknown 35.3
2502 Female, age 75, unknown 34.6
Periaquaductal grey, dorsal
nTPM: 34.9
1840 Male, age 53, unknown 39.4
1831 Male, age 72, unknown 33.9
2464 Female, age 72, unknown 33.6
2850 Male, age 76, both hemispheres 32.9
Periaquaductal grey, lateral
nTPM: 29.7
2053 Male, age 18, unknown 34.9
2140 Male, age 76, both hemispheres 30.0
2272 Male, age 74, both hemispheres 24.0
Pretectal area
nTPM: 34.8
2825 Male, age 18, unknown 42.2
1816 Male, age 51, unknown 40.3
1815 Male, age 53, unknown 39.3
1817 Female, age 42, unknown 38.1
2407 Male, age 75, both hemispheres 37.9
2007 Male, age 72, unknown 36.5
1944 Female, age 72, unknown 34.0
2316 Male, age 76, right hemisphere 30.1
2667 Female, age 75, unknown 29.6
2224 Female, age 72, unknown 29.4
2273 Male, age 74, both hemispheres 25.5
Red nucleus
nTPM: 40.4
2588 Male, age 74, left hemisphere 54.8
2725 Female, age 75, unknown 47.9
2503 Female, age 72, unknown 45.5
2584 Male, age 75, left hemisphere 44.5
1821 Female, age 72, unknown 39.5
2823 Male, age 76, right hemisphere 37.4
2769 Male, age 72, unknown 37.1
1954 Female, age 42, unknown 37.0
2227 Male, age 72, unknown 36.8
1865 Male, age 51, unknown 35.7
1904 Male, age 53, unknown 35.6
2785 Male, age 18, unknown 32.9
Substantia nigra
nTPM: 40.1
2665 Male, age 74, both hemispheres 47.5
1916 Female, age 42, unknown 46.1
2699 Male, age 18, unknown 44.7
1851 Male, age 51, unknown 41.0
2583 Male, age 75, right hemisphere 38.8
1889 Female, age 72, unknown 37.3
1941 Male, age 53, unknown 36.8
2241 Male, age 72, unknown 36.7
2590 Female, age 75, unknown 36.5
2409 Female, age 72, unknown 35.3
Superior colliculus
nTPM: 36.5
2664 Male, age 75, both hemispheres 44.9
2587 Male, age 74, left hemisphere 40.5
2668 Female, age 75, unknown 39.3
1839 Male, age 51, unknown 37.9
1796 Male, age 53, unknown 35.8
2261 Male, age 18, unknown 34.6
1995 Male, age 72, unknown 33.4
2087 Female, age 72, unknown 33.3
1913 Female, age 42, unknown 32.9
1895 Male, age 76, right hemisphere 32.7
Ventral tegmental area
nTPM: 36.8
1915 Female, age 42, unknown 41.0
2410 Female, age 72, unknown 36.7
1942 Male, age 51, unknown 36.0
2218 Male, age 76, both hemispheres 35.8
2021 Male, age 53, unknown 35.6
2223 Female, age 72, unknown 35.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 151.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 151.4
Samples: 139

Max nTPM: 343.3
Min nTPM: 85.5
Std nTPM: 50.2
Median nTPM: 141.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 343.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 323.8
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 303.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 285.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 271.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 260.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 256.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 245.6
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 234.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 232.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 230.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 89.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 89.2
FF:10158-103A5 76 years, female 89.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 30.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.4
Samples: 4

Max nTPM: 40.8
Min nTPM: 15.9
Sample A Female 40.8
Sample B Female 23.9
Sample C Male 33.1
Sample D Male 15.9
Midbrain
nTPM: 28.2
Samples: 4

Max nTPM: 31.8
Min nTPM: 22.4
Sample A Female 22.4
Sample B Female 30.6
Sample C Male 28.1
Sample D Male 31.8
Periaqueductal gray
nTPM: 29.8
Samples: 3

Max nTPM: 33.6
Min nTPM: 26.0
Sample B Female 29.9
Sample C Male 33.6
Sample D Male 26.0
Superior colliculi
nTPM: 30.4
Samples: 4

Max nTPM: 39.5
Min nTPM: 24.3
Sample A Female 39.5
Sample B Female 24.3
Sample C Male 27.5
Sample D Male 30.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 26.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 26.2
Samples: 4

Max nTPM: 27.4
Min nTPM: 25.2
Sample A Male 27.4
Sample B Male 26.5
Sample C Female 25.2
Sample D Female 25.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.5
69113632 Antisense, RP_050316_02_E01, Mouse strain C57BL/6J (56 days, male) 3.5

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