MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:119.5 nTPM
HPA Brain:96.6 nTPM
GTEx:119.5 nTPM
FANTOM5:158.5 Scaled Tags Per Million
Pig:1.2 nTPM
Mouse:15.8 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 96.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 62.1
2666 Male, age 74, left hemisphere 78.4
1870 Female, age 42, unknown 76.5
2828 Female, age 72, unknown 72.1
2019 Male, age 18, unknown 71.2
1830 Male, age 51, unknown 66.1
1833 Male, age 53, unknown 65.9
2411 Female, age 72, unknown 60.8
1827 Male, age 72, unknown 50.6
2586 Male, age 75, left hemisphere 46.0
2219 Male, age 76, both hemispheres 33.9
Dorsal raphe nucleus
nTPM: 96.6
2047 Male, age 72, unknown 113.6
1828 Male, age 53, unknown 111.1
2016 Female, age 72, unknown 95.5
2298 Female, age 72, unknown 94.9
2750 Male, age 76, both hemispheres 68.0
Inferior colliculus
nTPM: 64.1
1848 Female, age 42, unknown 68.9
1890 Male, age 53, unknown 65.2
2097 Female, age 72, unknown 64.0
2849 Male, age 72, unknown 58.2
Median raphe nucleus
nTPM: 74.3
2220 Male, age 76, midline 74.3
Periaquaductal grey, anterior
nTPM: 74.6
2502 Female, age 75, unknown 88.6
1795 Male, age 51, unknown 76.3
1947 Male, age 18, unknown 58.9
Periaquaductal grey, dorsal
nTPM: 77.4
2850 Male, age 76, both hemispheres 117.2
1840 Male, age 53, unknown 66.0
2464 Female, age 72, unknown 63.5
1831 Male, age 72, unknown 62.9
Periaquaductal grey, lateral
nTPM: 89.9
2140 Male, age 76, both hemispheres 126.9
2272 Male, age 74, both hemispheres 79.1
2053 Male, age 18, unknown 63.6
Pretectal area
nTPM: 64.8
2273 Male, age 74, both hemispheres 92.9
2316 Male, age 76, right hemisphere 83.9
2224 Female, age 72, unknown 83.1
2825 Male, age 18, unknown 78.3
2667 Female, age 75, unknown 62.0
1817 Female, age 42, unknown 59.9
2407 Male, age 75, both hemispheres 55.6
1944 Female, age 72, unknown 52.7
1815 Male, age 53, unknown 50.8
2007 Male, age 72, unknown 47.6
1816 Male, age 51, unknown 46.1
Red nucleus
nTPM: 73.8
1821 Female, age 72, unknown 86.9
2227 Male, age 72, unknown 85.4
2769 Male, age 72, unknown 84.1
2823 Male, age 76, right hemisphere 81.3
1954 Female, age 42, unknown 80.0
1865 Male, age 51, unknown 72.6
1904 Male, age 53, unknown 72.1
2588 Male, age 74, left hemisphere 70.8
2725 Female, age 75, unknown 70.4
2503 Female, age 72, unknown 63.4
2785 Male, age 18, unknown 61.4
2584 Male, age 75, left hemisphere 57.2
Substantia nigra
nTPM: 74.6
2699 Male, age 18, unknown 103.0
2665 Male, age 74, both hemispheres 91.8
1851 Male, age 51, unknown 87.7
1916 Female, age 42, unknown 86.9
2241 Male, age 72, unknown 76.4
1941 Male, age 53, unknown 69.4
2590 Female, age 75, unknown 64.4
2409 Female, age 72, unknown 61.9
1889 Female, age 72, unknown 54.2
2583 Male, age 75, right hemisphere 51.0
Superior colliculus
nTPM: 63.1
1995 Male, age 72, unknown 76.5
2587 Male, age 74, left hemisphere 75.8
1839 Male, age 51, unknown 69.1
2668 Female, age 75, unknown 62.1
2261 Male, age 18, unknown 61.0
2087 Female, age 72, unknown 60.2
1913 Female, age 42, unknown 59.9
1796 Male, age 53, unknown 58.0
1895 Male, age 76, right hemisphere 55.6
2664 Male, age 75, both hemispheres 52.5
Ventral tegmental area
nTPM: 77.5
2021 Male, age 53, unknown 95.4
1915 Female, age 42, unknown 84.1
2223 Female, age 72, unknown 76.2
2218 Male, age 76, both hemispheres 72.1
1942 Male, age 51, unknown 70.3
2410 Female, age 72, unknown 67.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 119.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 119.5
Samples: 139

Max nTPM: 470.2
Min nTPM: 36.0
Std nTPM: 67.5
Median nTPM: 100.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 470.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 391.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 333.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 319.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 266.4
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 265.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 257.6
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 255.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 252.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 212.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 205.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 158.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 158.5
FF:10158-103A5 76 years, female 158.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 1.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 0.9
Samples: 4

Max nTPM: 1.4
Min nTPM: 0.1
Sample A Female 0.1
Sample B Female 1.1
Sample C Male 1.4
Sample D Male 0.9
Midbrain
nTPM: 0.8
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 1.0
Sample C Male 0.7
Sample D Male 1.2
Periaqueductal gray
nTPM: 1.1
Samples: 3

Max nTPM: 1.9
Min nTPM: 0.7
Sample B Female 0.8
Sample C Male 0.7
Sample D Male 1.9
Superior colliculi
nTPM: 1.1
Samples: 4

Max nTPM: 1.6
Min nTPM: 0.7
Sample A Female 0.7
Sample B Female 0.8
Sample C Male 1.6
Sample D Male 1.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 15.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.8
Samples: 4

Max nTPM: 16.7
Min nTPM: 14.6
Sample A Male 16.7
Sample B Male 16.2
Sample C Female 14.6
Sample D Female 15.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68269294 Antisense, RP_041129_01_F02, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org