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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:339.0 nTPM
GTEx:339.0 nTPM
FANTOM5:436.5 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA001925
Squamous epithelial cells Not detected



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

339.0
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 339.0
Samples: 156

Max nTPM: 699.0
Min nTPM: 169.6
Std nTPM: 83.8
Median nTPM: 325.0
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 699.0
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 604.3
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 565.8
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 546.9
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 544.5
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 543.2
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 518.2
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 504.8
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 476.1
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 469.9
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 469.0
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 443.1
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 442.2
GTEX-14PKU-1326-SM-6871B 40-49 years, female 440.1
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 440.1
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 439.9
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 438.0
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 436.7
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 432.1
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 429.1
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 428.3
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 426.2
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 423.6
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 423.2
GTEX-S341-1226-SM-4AD5S 40-49 years, female 419.8
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 415.9
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 415.5
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 406.9
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 406.7
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 406.3
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 406.2
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 403.7
GTEX-11I78-2026-SM-5987C 50-59 years, female 403.0
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 401.0
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 397.6
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 397.2
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 389.9
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 387.6
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 383.8
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 383.7
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 381.1
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 380.6
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 376.6
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 375.6
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 368.8
GTEX-QCQG-1226-SM-48U23 50-59 years, female 364.0
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 363.9
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 363.4
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 363.3
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 362.1
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 360.1
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 359.3
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 358.6
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 354.3
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 354.1
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 353.7
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 351.1
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 350.8
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 349.9
GTEX-1C475-0526-SM-793AC 40-49 years, female 349.3
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 348.4
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 346.6
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 345.0
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 344.0
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 343.7
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 342.9
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 341.4
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 340.0
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 334.0
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 333.5
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 332.2
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 331.6
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 329.4
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 329.0
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 327.9
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 327.0
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 325.5
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 325.2
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 324.8
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 323.4
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 321.9
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 321.1
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 320.8
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 320.6
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 320.5
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 319.0
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 317.5
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 313.7
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 313.5
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 310.4
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 309.2
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 309.2
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 308.0
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 306.3
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 306.1
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 306.1
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 306.1
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 305.4
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 305.3
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 305.3
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 302.1
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 299.4
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 297.7
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 297.0
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 295.6
GTEX-16NPV-2526-SM-6M483 50-59 years, female 295.6
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 295.3
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 294.7
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 293.8
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 293.3
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 292.7
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 291.2
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 291.2
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 290.3
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 290.3
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 288.9
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 288.9
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 287.4
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 286.3
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 285.7
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 284.1
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 280.7
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 280.6
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 279.9
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 278.1
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 277.5
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 277.3
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 273.0
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 272.1
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 272.0
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 269.0
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 267.5
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 265.7
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 264.8
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 263.7
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 252.6
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 251.4
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 250.3
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 245.6
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 245.4
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 244.7
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 243.5
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 243.2
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 242.7
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 232.7
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 231.8
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 231.8
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 227.0
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 222.4
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 212.6
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 209.4
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 206.1
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 201.9
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 190.0
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 172.2
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 169.6
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

436.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 436.5
FF:10204-103F6 68 years, female 436.5

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