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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:27.5 nTPM
HPA Brain:116.0 nTPM
GTEx:27.5 nTPM
FANTOM5:42.1 Scaled Tags Per Million
Pig:31.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

116.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 109.3
2565 Male, age 75, midline 159.5
2194 Female, age 79, both hemispheres 132.4
2816 Male, age 47, midline 87.2
1981 Female, age 72, midline 85.7
2048 Male, age 55, midline 82.0
Cervical spinal cord, dorsal horn
nTPM: 116.0
2721 Male, age 90, both hemispheres 173.1
2297 Male, age 75, both hemispheres 168.0
1877 Male, age 55, unknown 119.2
2069 Male, age 47, both hemispheres 106.3
2173 Female, age 72, unknown 77.1
2296 Male, age 66, both hemispheres 52.1
Cervical spinal cord, ventral horn
nTPM: 116.0
2068 Male, age 55, unknown 142.6
2820 Female, age 79, both hemispheres 142.5
2480 Male, age 75, both hemispheres 135.6
2295 Male, age 66, both hemispheres 124.3
2809 Male, age 90, both hemispheres 106.1
2098 Female, age 72, unknown 44.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

27.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 27.5
Samples: 159

Max nTPM: 110.0
Min nTPM: 8.0
Std nTPM: 16.9
Median nTPM: 22.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 110.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 93.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 81.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 79.2
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 75.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 73.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 65.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 59.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 57.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 56.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 56.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 55.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 54.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 54.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 52.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 51.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 50.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 48.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 47.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 45.8
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 45.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 44.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 44.1
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 42.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 41.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 40.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 40.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 39.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 38.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 37.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 36.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 36.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 35.6
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 35.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 35.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 35.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 34.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 34.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 33.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 33.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 32.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 32.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 31.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 31.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 31.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 30.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 30.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 29.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 28.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 28.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 28.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 27.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 27.7
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 27.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 26.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 26.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 26.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 26.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 25.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 25.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 25.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 25.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 25.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 25.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 25.0
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 25.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 24.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 24.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 24.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 23.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 23.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 23.6
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 23.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 23.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 23.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 22.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 22.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 22.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 22.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 22.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 22.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 22.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 22.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 22.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 22.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 22.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 21.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 21.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 21.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 21.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 21.5
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 21.4
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 21.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 21.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 21.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 20.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 20.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 19.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 19.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 19.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 19.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 19.0
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 18.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 18.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 18.2
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 18.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 18.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 18.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 17.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 17.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 17.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 17.1
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 17.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 16.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 16.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 16.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 15.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 15.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 15.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 15.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 15.4
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 15.3
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 15.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 14.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 14.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 14.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 14.7
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 14.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 14.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 14.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 14.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 14.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 14.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 14.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 14.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 14.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 14.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 13.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 13.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 13.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 13.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 13.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 12.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 12.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 12.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 12.1
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 11.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 11.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 11.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 11.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 11.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 11.0
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 11.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 10.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 10.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 10.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 9.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 8.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 8.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

42.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 42.1
FF:10181-103D1 60 years, female 45.1
FF:10159-103A6 76 years, female 39.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

31.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 24.2
Samples: 4

Max nTPM: 45.4
Min nTPM: 6.5
Sample A Female 45.4
Sample B Female 12.3
Sample C Male 6.5
Sample D Male 32.4
Ventral spinal cord
nTPM: 31.3
Samples: 4

Max nTPM: 40.0
Min nTPM: 15.2
Sample A Female 40.0
Sample B Female 34.0
Sample C Male 36.0
Sample D Male 15.2

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