MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:42.3 nTPM
HPA Brain:50.4 nTPM
GTEx:42.3 nTPM
FANTOM5:23.4 Scaled Tags Per Million
Pig:23.2 nTPM
Mouse:38.2 nTPM
Allen mouse:10.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 50.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.1
2586 Male, age 75, left hemisphere 70.8
2019 Male, age 18, unknown 55.5
2828 Female, age 72, unknown 49.7
2666 Male, age 74, left hemisphere 42.5
1827 Male, age 72, unknown 41.2
2219 Male, age 76, both hemispheres 37.1
2411 Female, age 72, unknown 37.1
1870 Female, age 42, unknown 30.7
1833 Male, age 53, unknown 29.4
1830 Male, age 51, unknown 27.2
Dorsal raphe nucleus
nTPM: 41.6
2298 Female, age 72, unknown 52.9
2047 Male, age 72, unknown 42.3
1828 Male, age 53, unknown 41.6
2750 Male, age 76, both hemispheres 36.7
2016 Female, age 72, unknown 34.4
Inferior colliculus
nTPM: 35.0
2097 Female, age 72, unknown 42.6
1890 Male, age 53, unknown 39.3
1848 Female, age 42, unknown 31.8
2849 Male, age 72, unknown 26.5
Median raphe nucleus
nTPM: 31.2
2220 Male, age 76, midline 31.2
Periaquaductal grey, anterior
nTPM: 50.4
1795 Male, age 51, unknown 55.7
2502 Female, age 75, unknown 49.5
1947 Male, age 18, unknown 46.1
Periaquaductal grey, dorsal
nTPM: 28.7
2464 Female, age 72, unknown 36.1
1840 Male, age 53, unknown 30.7
1831 Male, age 72, unknown 29.0
2850 Male, age 76, both hemispheres 19.1
Periaquaductal grey, lateral
nTPM: 28.7
2272 Male, age 74, both hemispheres 33.1
2053 Male, age 18, unknown 27.0
2140 Male, age 76, both hemispheres 26.0
Pretectal area
nTPM: 47.9
2007 Male, age 72, unknown 70.7
1816 Male, age 51, unknown 68.3
1944 Female, age 72, unknown 66.4
1817 Female, age 42, unknown 65.0
1815 Male, age 53, unknown 51.0
2667 Female, age 75, unknown 39.0
2273 Male, age 74, both hemispheres 35.3
2224 Female, age 72, unknown 34.3
2407 Male, age 75, both hemispheres 34.2
2316 Male, age 76, right hemisphere 33.7
2825 Male, age 18, unknown 29.3
Red nucleus
nTPM: 38.3
2785 Male, age 18, unknown 56.1
2588 Male, age 74, left hemisphere 49.4
2503 Female, age 72, unknown 43.9
2584 Male, age 75, left hemisphere 39.8
2227 Male, age 72, unknown 38.6
2769 Male, age 72, unknown 38.4
1904 Male, age 53, unknown 35.6
1821 Female, age 72, unknown 34.3
2725 Female, age 75, unknown 34.3
1954 Female, age 42, unknown 33.3
1865 Male, age 51, unknown 28.3
2823 Male, age 76, right hemisphere 27.9
Substantia nigra
nTPM: 49.9
1916 Female, age 42, unknown 72.3
2665 Male, age 74, both hemispheres 67.4
1851 Male, age 51, unknown 62.0
1889 Female, age 72, unknown 57.4
1941 Male, age 53, unknown 50.4
2583 Male, age 75, right hemisphere 48.4
2590 Female, age 75, unknown 40.2
2241 Male, age 72, unknown 39.6
2699 Male, age 18, unknown 33.8
2409 Female, age 72, unknown 27.3
Superior colliculus
nTPM: 44.3
2668 Female, age 75, unknown 65.9
2087 Female, age 72, unknown 57.6
2261 Male, age 18, unknown 52.7
2664 Male, age 75, both hemispheres 48.3
1796 Male, age 53, unknown 46.8
1995 Male, age 72, unknown 38.0
1913 Female, age 42, unknown 36.8
2587 Male, age 74, left hemisphere 36.1
1839 Male, age 51, unknown 33.9
1895 Male, age 76, right hemisphere 26.7
Ventral tegmental area
nTPM: 44.0
2410 Female, age 72, unknown 53.7
1915 Female, age 42, unknown 53.1
1942 Male, age 51, unknown 49.3
2021 Male, age 53, unknown 38.5
2218 Male, age 76, both hemispheres 37.7
2223 Female, age 72, unknown 31.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 42.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 42.3
Samples: 139

Max nTPM: 99.1
Min nTPM: 15.4
Std nTPM: 13.9
Median nTPM: 39.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 99.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 78.9
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 78.3
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 73.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 68.8
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 68.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 67.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 67.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 66.4
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 65.3
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 64.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 23.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.4
FF:10158-103A5 76 years, female 23.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 23.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.9
Samples: 4

Max nTPM: 27.8
Min nTPM: 18.6
Sample A Female 27.8
Sample B Female 18.9
Sample C Male 22.3
Sample D Male 18.6
Midbrain
nTPM: 23.3
Samples: 4

Max nTPM: 30.5
Min nTPM: 18.1
Sample A Female 30.5
Sample B Female 18.1
Sample C Male 25.8
Sample D Male 18.6
Periaqueductal gray
nTPM: 17.8
Samples: 3

Max nTPM: 19.5
Min nTPM: 15.1
Sample B Female 18.8
Sample C Male 19.5
Sample D Male 15.1
Superior colliculi
nTPM: 22.0
Samples: 4

Max nTPM: 25.5
Min nTPM: 20.3
Sample A Female 25.5
Sample B Female 20.3
Sample C Male 21.5
Sample D Male 20.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 38.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 38.2
Samples: 4

Max nTPM: 41.5
Min nTPM: 35.6
Sample A Male 41.5
Sample B Male 36.8
Sample C Female 35.6
Sample D Female 38.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 10.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.0
393240 Antisense, RP_040804_02_G09, Mouse strain C57BL/6J (56 days, male) 10.0

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