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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:503.6 nTPM
HPA Brain:627.1 nTPM
GTEx:503.6 nTPM
FANTOM5:612.8 Scaled Tags Per Million
Pig:625.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

627.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 605.0
2048 Male, age 55, midline 700.6
2565 Male, age 75, midline 654.9
1981 Female, age 72, midline 653.2
2194 Female, age 79, both hemispheres 549.8
2816 Male, age 47, midline 466.8
Cervical spinal cord, dorsal horn
nTPM: 528.3
2173 Female, age 72, unknown 670.0
1877 Male, age 55, unknown 581.4
2069 Male, age 47, both hemispheres 533.8
2721 Male, age 90, both hemispheres 494.0
2297 Male, age 75, both hemispheres 449.3
2296 Male, age 66, both hemispheres 441.2
Cervical spinal cord, ventral horn
nTPM: 627.1
2809 Male, age 90, both hemispheres 713.1
2295 Male, age 66, both hemispheres 698.2
2098 Female, age 72, unknown 660.3
2480 Male, age 75, both hemispheres 597.9
2068 Male, age 55, unknown 569.6
2820 Female, age 79, both hemispheres 523.8

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

503.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 503.6
Samples: 159

Max nTPM: 1495.1
Min nTPM: 174.9
Std nTPM: 150.7
Median nTPM: 487.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 1495.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 881.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 790.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 746.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 735.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 732.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 731.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 726.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 709.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 707.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 704.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 703.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 694.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 693.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 689.5
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 686.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 684.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 679.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 674.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 672.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 651.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 646.8
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 646.8
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 645.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 640.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 633.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 633.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 633.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 632.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 624.8
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 622.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 614.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 614.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 608.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 607.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 606.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 598.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 597.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 596.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 594.1
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 592.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 586.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 580.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 580.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 577.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 572.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 570.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 570.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 569.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 566.1
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 565.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 563.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 553.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 551.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 549.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 546.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 537.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 536.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 534.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 534.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 534.1
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 529.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 529.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 527.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 511.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 509.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 509.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 509.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 508.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 506.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 506.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 500.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 499.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 495.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 493.5
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 493.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 491.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 490.9
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 490.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 487.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 484.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 479.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 479.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 478.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 477.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 477.1
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 475.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 475.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 471.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 468.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 467.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 464.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 464.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 462.9
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 462.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 459.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 458.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 456.8
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 455.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 451.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 448.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 447.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 447.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 444.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 443.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 441.4
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 438.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 436.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 430.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 429.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 426.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 423.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 419.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 419.0
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 418.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 418.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 416.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 415.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 413.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 411.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 407.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 405.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 405.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 402.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 401.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 399.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 394.7
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 392.6
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 384.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 383.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 382.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 377.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 375.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 369.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 368.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 368.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 367.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 362.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 359.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 344.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 344.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 333.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 332.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 328.0
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 328.0
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 320.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 319.5
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 318.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 318.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 309.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 309.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 307.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 280.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 280.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 238.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 236.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 222.5
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 212.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 174.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

612.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 612.8
FF:10159-103A6 76 years, female 626.4
FF:10181-103D1 60 years, female 599.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

625.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 469.1
Samples: 4

Max nTPM: 514.9
Min nTPM: 406.5
Sample A Female 406.5
Sample B Female 501.4
Sample C Male 514.9
Sample D Male 453.4
Ventral spinal cord
nTPM: 625.4
Samples: 4

Max nTPM: 719.0
Min nTPM: 526.9
Sample A Female 552.4
Sample B Female 719.0
Sample C Male 703.2
Sample D Male 526.9

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