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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:136.6 nTPM
HPA Brain:126.7 nTPM
GTEx:136.6 nTPM
FANTOM5:153.1 Scaled Tags Per Million
Pig:2.7 nTPM
Mouse:79.6 nTPM
Allen mouse:6.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

126.7
Sample id Sample description nTPM
Amygdala
nTPM: 126.7
2814 Male, age 76, right hemisphere 163.6
2514 Male, age 75, right hemisphere 139.4
2517 Female, age 94, left hemisphere 112.9
2695 Female, age 67, right hemisphere 112.3
1987 Female, age 91, left hemisphere 105.3
Basal amygdala
nTPM: 94.9
2110 Male, age 80, left hemisphere 111.9
2609 Male, age 75, right hemisphere 105.6
1955 Male, age 76, both hemispheres 103.4
2685 Female, age 94, left hemisphere 94.3
2243 Female, age 91, right hemisphere 82.2
2827 Female, age 67, right hemisphere 71.8
Central amygdala
nTPM: 101.0
1905 Male, age 76, both hemispheres 135.6
2239 Male, age 80, left hemisphere 106.9
2701 Female, age 91, right hemisphere 97.2
2515 Male, age 75, right hemisphere 93.0
2826 Female, age 94, left hemisphere 72.2
Corticomedial amygdala
nTPM: 84.4
2428 Male, age 75, right hemisphere 104.1
2429 Female, age 94, left hemisphere 101.4
2240 Male, age 76, both hemispheres 85.3
2829 Male, age 80, left hemisphere 79.9
2242 Female, age 91, right hemisphere 71.2
2535 Female, age 67, right hemisphere 64.3
Lateral amygdala
nTPM: 104.9
2516 Male, age 75, right hemisphere 129.7
1883 Male, age 76, both hemispheres 124.8
2256 Male, age 80, left hemisphere 105.7
2534 Female, age 94, left hemisphere 101.1
2255 Female, age 91, right hemisphere 92.3
2830 Female, age 67, right hemisphere 75.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

136.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 136.6
Samples: 152

Max nTPM: 411.2
Min nTPM: 29.9
Std nTPM: 46.5
Median nTPM: 130.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 411.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 262.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 227.2
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 223.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 222.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 221.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 217.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 215.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 210.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 205.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 205.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 201.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 201.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 201.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 200.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 200.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 195.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 194.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 194.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 194.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 191.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 190.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 190.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 187.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 181.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 179.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 178.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 174.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 172.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 168.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 167.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 166.7
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 162.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 162.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 162.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 161.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 159.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 159.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 159.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 154.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 154.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 153.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 152.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 152.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 151.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 150.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 150.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 150.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 150.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 149.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 149.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 148.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 148.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 147.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 146.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 142.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 142.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 141.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 138.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 138.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 137.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 136.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 135.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 135.5
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 135.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 134.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 134.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 134.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 133.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 133.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 133.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 132.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 132.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 132.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 131.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 131.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 129.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 129.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 128.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 127.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 127.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 127.1
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 127.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 126.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 124.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 124.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 123.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 122.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 122.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 121.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 121.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 121.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 120.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 120.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 119.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 119.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 119.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 118.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 117.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 117.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 117.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 114.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 113.7
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 113.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 113.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 113.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 112.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 111.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 111.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 110.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 110.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 105.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 105.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 105.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 104.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 104.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 104.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 103.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 102.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 101.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 101.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 100.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 99.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 98.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 98.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 97.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 96.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 95.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 95.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 95.5
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 95.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 94.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 92.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 89.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 89.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 88.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 87.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 85.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 84.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 84.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 84.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 83.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 81.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 79.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 74.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 74.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 73.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 67.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 63.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 61.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 49.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 29.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

153.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 153.1
FF:10151-102I7 76 years, female 153.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

2.7
Pig sample Sample description nTPM
Amygdala
nTPM: 18.4
Samples: 4

Max nTPM: 22.7
Min nTPM: 16.0
Sample A Female 22.7
Sample B Female 18.3
Sample C Male 16.6
Sample D Male 16.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 79.6
Samples: 4

Max nTPM: 91.3
Min nTPM: 73.6
Sample A Male 77.7
Sample B Male 91.3
Sample C Female 73.6
Sample D Female 75.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

6.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.3
68301431 Antisense, RP_041130_01_C04, Mouse strain C57BL/6J (56 days, male) 6.3
Cortical subplate
Expression energy: 6.3
68301431 Antisense, RP_041130_01_C04, Mouse strain C57BL/6J (56 days, male) 6.3

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