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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:217.0 nTPM
HPA Brain:160.3 nTPM
GTEx:217.0 nTPM
FANTOM5:255.6 Scaled Tags Per Million
Pig:1.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

160.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 134.6
1981 Female, age 72, midline 188.9
2194 Female, age 79, both hemispheres 138.2
2048 Male, age 55, midline 130.2
2816 Male, age 47, midline 122.2
2565 Male, age 75, midline 93.3
Cervical spinal cord, dorsal horn
nTPM: 160.3
2173 Female, age 72, unknown 244.4
2296 Male, age 66, both hemispheres 237.6
2069 Male, age 47, both hemispheres 161.2
1877 Male, age 55, unknown 118.0
2297 Male, age 75, both hemispheres 100.6
2721 Male, age 90, both hemispheres 100.3
Cervical spinal cord, ventral horn
nTPM: 130.6
2098 Female, age 72, unknown 167.8
2068 Male, age 55, unknown 158.3
2820 Female, age 79, both hemispheres 136.6
2809 Male, age 90, both hemispheres 124.7
2295 Male, age 66, both hemispheres 100.5
2480 Male, age 75, both hemispheres 95.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

217.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 217.0
Samples: 159

Max nTPM: 547.5
Min nTPM: 74.0
Std nTPM: 74.2
Median nTPM: 208.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 547.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 473.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 441.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 427.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 386.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 374.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 357.1
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 354.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 354.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 347.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 326.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 319.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 301.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 301.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 300.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 296.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 296.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 291.8
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 290.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 289.7
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 289.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 285.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 285.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 285.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 284.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 282.4
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 278.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 276.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 276.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 276.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 268.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 268.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 267.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 266.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 263.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 263.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 261.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 260.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 260.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 257.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 255.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 254.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 253.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 251.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 249.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 248.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 247.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 246.7
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 244.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 242.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 241.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 236.4
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 236.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 235.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 234.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 234.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 234.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 234.0
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 233.2
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 233.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 228.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 228.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 227.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 226.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 226.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 226.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 224.0
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 220.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 220.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 218.8
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 217.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 217.3
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 215.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 214.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 212.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 211.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 211.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 210.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 209.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 208.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 206.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 202.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 201.7
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 200.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 199.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 199.1
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 198.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 198.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 197.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 197.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 196.9
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 195.1
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 194.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 193.5
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 193.5
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 193.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 192.0
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 191.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 191.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 190.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 189.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 189.7
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 188.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 186.8
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 186.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 184.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 182.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 180.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 179.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 179.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 178.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 178.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 177.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 176.8
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 175.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 175.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 173.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 173.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 170.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 170.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 165.4
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 162.3
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 161.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 161.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 161.1
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 154.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 152.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 152.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 152.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 151.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 149.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 148.9
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 145.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 145.7
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 144.8
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 144.5
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 142.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 142.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 138.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 136.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 135.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 134.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 129.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 128.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 128.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 124.6
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 124.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 123.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 122.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 121.8
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 116.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 114.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 113.4
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 112.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 110.0
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 108.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 94.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 84.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 74.0
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

255.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 255.6
FF:10181-103D1 60 years, female 271.8
FF:10159-103A6 76 years, female 239.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 58.5
Samples: 4

Max nTPM: 60.9
Min nTPM: 55.1
Sample A Female 55.1
Sample B Female 58.6
Sample C Male 59.2
Sample D Male 60.9
Ventral spinal cord
nTPM: 72.3
Samples: 4

Max nTPM: 82.9
Min nTPM: 66.0
Sample A Female 66.4
Sample B Female 74.0
Sample C Male 66.0
Sample D Male 82.9

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