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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:148.7 nTPM
HPA Brain:300.2 nTPM
GTEx:148.7 nTPM
FANTOM5:702.3 Scaled Tags Per Million
Pig:239.3 nTPM
Mouse:166.8 nTPM
Allen mouse:11.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

300.2
Sample id Sample description nTPM
Amygdala
nTPM: 165.0
2517 Female, age 94, left hemisphere 236.6
1987 Female, age 91, left hemisphere 203.2
2514 Male, age 75, right hemisphere 144.7
2695 Female, age 67, right hemisphere 131.1
2814 Male, age 76, right hemisphere 109.4
Basal amygdala
nTPM: 285.4
2243 Female, age 91, right hemisphere 390.4
2685 Female, age 94, left hemisphere 329.7
2110 Male, age 80, left hemisphere 300.3
2827 Female, age 67, right hemisphere 279.7
1955 Male, age 76, both hemispheres 228.1
2609 Male, age 75, right hemisphere 184.2
Central amygdala
nTPM: 194.6
2826 Female, age 94, left hemisphere 310.0
2239 Male, age 80, left hemisphere 271.7
2701 Female, age 91, right hemisphere 145.5
2515 Male, age 75, right hemisphere 134.1
1905 Male, age 76, both hemispheres 111.8
Corticomedial amygdala
nTPM: 300.2
2242 Female, age 91, right hemisphere 451.7
2829 Male, age 80, left hemisphere 406.0
2535 Female, age 67, right hemisphere 393.1
2429 Female, age 94, left hemisphere 211.3
2240 Male, age 76, both hemispheres 196.1
2428 Male, age 75, right hemisphere 143.0
Lateral amygdala
nTPM: 205.8
2534 Female, age 94, left hemisphere 279.0
2256 Male, age 80, left hemisphere 274.0
2255 Female, age 91, right hemisphere 217.0
2830 Female, age 67, right hemisphere 168.8
1883 Male, age 76, both hemispheres 150.7
2516 Male, age 75, right hemisphere 145.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

148.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 148.7
Samples: 152

Max nTPM: 455.8
Min nTPM: 0.4
Std nTPM: 75.3
Median nTPM: 141.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 455.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 409.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 358.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 356.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 335.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 315.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 292.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 276.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 270.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 262.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 260.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 255.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 250.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 247.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 246.4
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 246.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 237.0
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 234.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 222.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 222.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 221.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 218.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 212.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 208.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 207.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 204.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 201.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 200.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 198.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 197.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 197.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 196.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 192.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 190.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 189.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 188.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 186.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 186.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 184.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 181.9
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 181.9
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 181.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 181.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 180.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 180.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 178.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 177.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 174.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 174.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 173.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 173.8
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 172.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 172.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 171.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 171.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 169.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 168.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 166.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 165.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 162.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 161.5
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 160.3
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 158.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 156.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 156.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 156.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 154.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 154.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 153.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 153.0
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 149.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 146.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 144.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 144.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 143.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 143.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 140.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 136.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 134.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 133.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 132.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 131.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 129.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 129.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 128.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 125.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 125.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 125.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 124.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 124.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 122.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 121.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 120.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 120.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 118.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 118.0
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 117.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 116.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 114.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 113.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 113.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 111.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 111.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 110.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 108.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 108.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 106.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 105.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 105.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 104.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 104.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 103.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 96.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 95.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 95.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 91.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 90.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 90.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 89.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 89.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 86.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 85.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 84.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 84.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 83.2
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 81.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 80.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 79.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 79.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 79.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 78.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 76.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 76.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 72.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 71.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 70.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 69.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 69.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 68.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 65.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 63.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 61.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 48.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 43.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 42.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 40.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 39.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 32.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 9.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 3.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 1.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 0.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

702.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 702.3
FF:10151-102I7 76 years, female 702.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

239.3
Pig sample Sample description nTPM
Amygdala
nTPM: 239.3
Samples: 4

Max nTPM: 355.3
Min nTPM: 168.9
Sample A Female 355.3
Sample B Female 168.9
Sample C Male 211.4
Sample D Male 221.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

166.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 166.8
Samples: 4

Max nTPM: 204.2
Min nTPM: 148.0
Sample A Male 164.1
Sample B Male 151.0
Sample C Female 204.2
Sample D Female 148.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

11.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 11.4
68798711 Antisense, RP_050217_01_B02, Mouse strain C57BL/6J (56 days, male) 11.4

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