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S100B
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  • S100B
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:705.9 nTPM
FANTOM5:270.8 Scaled Tags Per Million
Pig:1339.7 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA015768Antibody CAB000073Antibody CAB078196
Glial cells HighHighHigh
Neuronal cells Not detectedMediumNot detected







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

705.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 705.9
Samples: 246

Max nTPM: 1980.4
Min nTPM: 183.8
Std nTPM: 316.3
Median nTPM: 645.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1980.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1666.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 1661.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 1613.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 1598.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1591.2
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 1429.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1424.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1424.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1422.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1373.9
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1372.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1323.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1308.5
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1265.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 1254.0
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1220.4
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1218.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1214.4
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 1211.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1210.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1196.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 1191.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1189.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 1186.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 1183.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 1164.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1139.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1110.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 1088.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1079.6
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 1059.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1055.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1050.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 1043.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1040.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 1034.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1032.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 997.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 993.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 989.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 987.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 983.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 977.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 959.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 952.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 949.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 948.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 943.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 943.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 925.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 922.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 911.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 895.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 892.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 877.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 875.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 868.5
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 867.3
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 865.1
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 862.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 853.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 852.3
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 846.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 844.8
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 843.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 843.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 839.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 838.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 837.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 832.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 831.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 831.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 830.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 823.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 816.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 813.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 808.0
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 807.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 807.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 807.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 798.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 797.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 779.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 763.8
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 754.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 753.5
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 752.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 749.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 749.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 744.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 739.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 737.4
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 736.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 735.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 730.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 725.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 725.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 714.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 709.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 704.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 701.7
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 701.2
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 700.4
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 696.9
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 695.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 692.3
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 691.2
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 691.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 689.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 687.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 683.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 680.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 677.0
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 669.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 667.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 662.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 661.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 658.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 655.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 651.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 647.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 646.0
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 645.1
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 637.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 635.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 634.5
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 627.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 625.0
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 624.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 621.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 620.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 619.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 619.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 618.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 618.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 616.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 615.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 614.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 605.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 604.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 602.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 601.0
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 600.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 598.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 596.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 594.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 592.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 589.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 585.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 585.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 582.7
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 581.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 578.0
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 576.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 572.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 564.6
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 561.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 560.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 557.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 551.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 547.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 539.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 535.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 528.4
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 523.4
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 523.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 517.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 514.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 510.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 510.4
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 510.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 510.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 506.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 504.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 503.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 494.4
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 486.0
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 482.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 481.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 478.5
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 463.9
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 456.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 449.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 446.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 445.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 445.1
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 443.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 441.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 440.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 439.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 438.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 427.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 427.7
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 426.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 424.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 423.7
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 423.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 420.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 419.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 415.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 413.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 413.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 412.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 411.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 408.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 405.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 404.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 397.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 396.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 394.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 392.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 389.5
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 388.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 387.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 386.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 384.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 383.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 381.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 366.6
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 364.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 363.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 363.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 362.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 352.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 342.2
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 339.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 337.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 337.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 333.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 329.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 327.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 325.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 325.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 312.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 303.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 302.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 301.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 297.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 273.3
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 271.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 254.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 236.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 225.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 187.9
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 183.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

270.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 270.8
FF:10164-103B2 76 years, female 270.8

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1339.7
Pig sample Sample description nTPM
Caudate
nTPM: 1339.7
Samples: 4

Max nTPM: 1487.3
Min nTPM: 1134.1
Sample A Female 1321.1
Sample B Female 1416.3
Sample C Male 1487.3
Sample D Male 1134.1

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