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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1174.5 nTPM
HPA Brain:490.6 nTPM
GTEx:1174.5 nTPM
FANTOM5:756.8 Scaled Tags Per Million
Pig:6145.7 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

490.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 419.3
1981 Female, age 72, midline 535.3
2048 Male, age 55, midline 511.3
2816 Male, age 47, midline 429.4
2194 Female, age 79, both hemispheres 312.7
2565 Male, age 75, midline 307.8
Cervical spinal cord, dorsal horn
nTPM: 438.9
2296 Male, age 66, both hemispheres 721.1
2173 Female, age 72, unknown 681.1
1877 Male, age 55, unknown 385.0
2069 Male, age 47, both hemispheres 352.1
2721 Male, age 90, both hemispheres 268.6
2297 Male, age 75, both hemispheres 225.5
Cervical spinal cord, ventral horn
nTPM: 490.6
2098 Female, age 72, unknown 572.4
2068 Male, age 55, unknown 507.5
2480 Male, age 75, both hemispheres 468.9
2820 Female, age 79, both hemispheres 467.2
2809 Male, age 90, both hemispheres 466.8
2295 Male, age 66, both hemispheres 460.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1174.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 1174.5
Samples: 159

Max nTPM: 2398.8
Min nTPM: 235.8
Std nTPM: 472.6
Median nTPM: 1130.7
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 2398.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 2275.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 2218.5
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 2146.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 2126.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 2120.3
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 2119.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 2085.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 2044.2
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 2015.5
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 1999.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 1976.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 1898.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 1884.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 1884.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 1856.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 1854.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 1819.2
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 1799.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 1778.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 1747.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 1740.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 1732.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 1708.5
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 1698.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 1691.2
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 1668.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 1635.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 1629.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 1625.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 1616.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 1614.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 1609.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 1596.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 1578.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 1543.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 1518.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 1508.5
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 1485.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 1475.6
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 1455.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 1453.0
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 1449.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 1437.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 1428.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 1424.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 1421.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 1421.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 1411.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 1401.4
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 1384.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 1358.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 1354.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 1354.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 1350.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 1333.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 1323.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 1319.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 1306.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 1296.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 1291.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 1290.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 1268.1
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 1231.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 1226.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 1221.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 1209.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 1196.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 1175.4
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 1175.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 1167.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 1161.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 1145.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 1143.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 1138.4
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 1137.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 1135.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 1131.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 1131.6
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 1130.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 1129.7
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 1117.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 1105.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 1096.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 1073.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 1073.1
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 1070.6
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 1068.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 1062.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 1060.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 1055.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 1054.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 1050.1
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 1033.2
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 1027.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 1014.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 1008.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 1006.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 1005.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 1004.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 997.5
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 992.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 987.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 982.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 976.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 967.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 967.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 958.6
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 948.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 941.9
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 941.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 938.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 910.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 904.3
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 883.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 881.1
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 847.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 834.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 826.9
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 799.3
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 799.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 793.5
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 788.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 779.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 757.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 745.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 738.1
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 726.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 722.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 709.8
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 708.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 694.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 676.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 665.5
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 658.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 645.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 644.6
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 620.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 609.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 609.4
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 594.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 575.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 573.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 546.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 535.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 529.0
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 523.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 517.3
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 508.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 507.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 505.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 457.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 449.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 448.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 385.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 380.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 341.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 313.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 235.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

756.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 756.8
FF:10181-103D1 60 years, female 911.1
FF:10159-103A6 76 years, female 602.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

6145.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 4367.6
Samples: 4

Max nTPM: 5204.7
Min nTPM: 3975.9
Sample A Female 4104.3
Sample B Female 5204.7
Sample C Male 4185.6
Sample D Male 3975.9
Ventral spinal cord
nTPM: 6145.7
Samples: 4

Max nTPM: 6459.2
Min nTPM: 5756.9
Sample A Female 5942.0
Sample B Female 6459.2
Sample C Male 5756.9
Sample D Male 6424.6

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