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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:172.1 nTPM
HPA Brain:49.7 nTPM
GTEx:172.1 nTPM
FANTOM5:72.1 Scaled Tags Per Million
Pig:227.7 nTPM
Mouse:149.5 nTPM
Allen mouse:15.9 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

49.7
Sample id Sample description nTPM
Amygdala
nTPM: 39.8
2695 Female, age 67, right hemisphere 62.7
2517 Female, age 94, left hemisphere 39.8
2814 Male, age 76, right hemisphere 39.4
1987 Female, age 91, left hemisphere 32.9
2514 Male, age 75, right hemisphere 24.3
Basal amygdala
nTPM: 43.4
2243 Female, age 91, right hemisphere 49.6
2827 Female, age 67, right hemisphere 49.5
2110 Male, age 80, left hemisphere 44.9
2685 Female, age 94, left hemisphere 42.1
1955 Male, age 76, both hemispheres 41.7
2609 Male, age 75, right hemisphere 32.7
Central amygdala
nTPM: 49.2
2826 Female, age 94, left hemisphere 86.6
2239 Male, age 80, left hemisphere 48.5
2701 Female, age 91, right hemisphere 44.0
2515 Male, age 75, right hemisphere 34.7
1905 Male, age 76, both hemispheres 32.2
Corticomedial amygdala
nTPM: 45.4
2829 Male, age 80, left hemisphere 60.9
2242 Female, age 91, right hemisphere 50.7
2535 Female, age 67, right hemisphere 46.9
2428 Male, age 75, right hemisphere 43.9
2240 Male, age 76, both hemispheres 36.0
2429 Female, age 94, left hemisphere 33.8
Lateral amygdala
nTPM: 49.7
2830 Female, age 67, right hemisphere 81.4
2534 Female, age 94, left hemisphere 61.7
2516 Male, age 75, right hemisphere 43.4
2256 Male, age 80, left hemisphere 39.3
1883 Male, age 76, both hemispheres 37.3
2255 Female, age 91, right hemisphere 35.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

172.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 172.1
Samples: 152

Max nTPM: 877.0
Min nTPM: 72.8
Std nTPM: 82.5
Median nTPM: 157.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 877.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 377.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 354.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 343.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 330.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 314.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 295.8
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 287.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 278.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 275.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 270.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 270.8
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 259.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 255.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 253.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 250.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 243.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 243.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 240.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 238.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 235.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 235.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 230.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 229.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 229.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 227.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 226.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 217.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 215.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 214.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 213.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 213.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 211.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 207.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 203.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 202.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 201.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 201.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 201.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 201.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 201.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 198.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 197.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 196.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 195.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 193.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 189.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 186.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 186.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 186.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 184.3
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 183.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 183.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 179.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 178.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 177.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 177.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 177.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 176.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 176.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 175.2
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 171.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 170.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 165.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 165.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 163.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 162.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 161.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 161.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 160.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 160.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 159.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 159.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 158.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 158.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 157.2
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 157.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 155.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 154.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 153.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 152.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 149.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 149.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 147.8
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 146.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 146.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 145.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 144.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 144.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 143.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 143.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 142.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 142.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 140.0
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 138.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 137.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 137.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 136.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 135.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 134.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 134.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 133.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 133.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 132.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 131.7
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 130.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 128.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 128.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 127.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 127.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 125.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 124.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 123.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 122.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 121.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 120.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 119.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 118.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 117.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 115.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 115.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 114.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 114.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 112.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 110.7
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 110.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 109.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 108.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 108.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 107.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 107.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 107.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 106.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 106.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 105.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 103.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 103.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 102.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 102.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 100.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 98.8
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 98.6
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 98.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 98.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 93.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 93.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 91.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 91.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 87.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 83.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 82.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 72.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

72.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 72.1
FF:10151-102I7 76 years, female 72.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

227.7
Pig sample Sample description nTPM
Amygdala
nTPM: 227.7
Samples: 4

Max nTPM: 380.0
Min nTPM: 132.1
Sample A Female 380.0
Sample B Female 132.1
Sample C Male 164.0
Sample D Male 234.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

149.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 149.5
Samples: 4

Max nTPM: 181.0
Min nTPM: 131.3
Sample A Male 135.0
Sample B Male 131.3
Sample C Female 181.0
Sample D Female 150.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

15.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 15.9
77454976 Antisense, RP_070129_01_E08, Mouse strain C57BL/6J (56 days, male) 16.6
79587728 Antisense, RP_071204_02_D10, Mouse strain C57BL/6J (56 days, male) 15.3

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