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AP2M1
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  • AP2M1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:217.1 nTPM
FANTOM5:249.2 Scaled Tags Per Million
Pig:188.2 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA036849
Glial cells Not detected
Neuronal cells High



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

217.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 217.1
Samples: 246

Max nTPM: 456.2
Min nTPM: 108.6
Std nTPM: 58.6
Median nTPM: 212.4
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 456.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 410.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 382.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 362.3
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 350.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 339.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 332.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 330.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 329.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 327.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 323.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 323.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 318.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 318.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 316.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 314.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 314.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 313.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 311.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 307.7
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 306.1
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 305.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 302.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 300.6
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 298.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 294.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 293.2
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 291.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 290.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 288.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 288.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 288.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 285.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 283.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 281.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 280.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 279.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 277.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 276.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 273.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 271.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 270.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 269.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 268.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 266.9
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 266.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 265.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 265.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 265.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 265.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 263.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 262.3
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 260.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 258.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 257.3
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 257.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 257.1
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 257.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 256.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 256.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 255.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 255.5
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 255.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 254.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 253.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 253.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 252.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 251.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 250.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 249.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 249.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 249.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 247.6
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 247.5
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 243.7
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 243.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 243.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 243.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 243.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 242.9
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 241.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 240.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 239.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 239.3
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 238.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 238.4
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 238.3
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 236.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 235.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 235.0
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 232.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 232.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 231.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 230.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 229.1
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 229.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 228.9
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 227.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 225.3
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 224.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 224.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 224.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 223.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 223.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 223.1
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 223.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 222.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 222.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 221.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 220.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 218.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 218.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 218.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 217.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 216.8
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 216.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 215.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 214.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 213.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 213.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 213.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 212.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 212.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 212.1
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 212.1
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 211.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 210.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 209.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 207.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 207.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 206.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 206.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 206.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 205.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 205.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 204.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 203.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 202.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 201.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 199.0
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 197.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 196.1
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 195.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 195.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 195.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 195.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 193.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 188.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 187.1
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 186.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 186.3
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 186.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 186.2
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 186.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 185.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 185.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 184.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 184.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 184.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 184.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 183.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 183.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 182.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 181.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 181.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 181.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 180.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 180.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 180.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 180.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 180.2
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 179.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 178.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 177.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 176.2
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 175.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 174.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 174.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 173.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 173.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 172.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 172.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 172.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 171.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 170.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 168.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 168.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 167.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 167.6
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 167.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 166.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 165.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 164.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 164.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 163.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 163.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 162.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 162.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 162.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 161.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 161.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 161.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 160.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 160.2
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 159.4
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 158.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 157.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 157.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 156.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 156.8
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 155.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 153.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 153.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 151.9
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 151.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 151.3
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 150.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 150.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 150.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 150.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 148.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 148.1
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 147.8
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 147.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 146.3
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 145.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 144.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 142.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 142.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 141.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 140.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 139.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 139.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 139.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 138.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 136.6
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 136.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 135.4
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 134.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 133.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 132.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 131.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 130.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 117.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 115.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 108.6
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

249.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 249.2
FF:10164-103B2 76 years, female 249.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

188.2
Pig sample Sample description nTPM
Caudate
nTPM: 188.2
Samples: 4

Max nTPM: 223.7
Min nTPM: 162.9
Sample A Female 162.9
Sample B Female 195.0
Sample C Male 223.7
Sample D Male 171.3

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