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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1882.8 nTPM
HPA Brain:489.6 nTPM
GTEx:1882.8 nTPM
FANTOM5:90.3 Scaled Tags Per Million
Pig:249.0 nTPM
Mouse:1593.2 nTPM
Allen mouse:10.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

489.6
Sample id Sample description nTPM
Amygdala
nTPM: 489.6
2695 Female, age 67, right hemisphere 673.9
2514 Male, age 75, right hemisphere 480.8
2814 Male, age 76, right hemisphere 471.9
2517 Female, age 94, left hemisphere 420.7
1987 Female, age 91, left hemisphere 400.5
Basal amygdala
nTPM: 393.5
2827 Female, age 67, right hemisphere 541.0
2609 Male, age 75, right hemisphere 400.3
2685 Female, age 94, left hemisphere 393.0
2110 Male, age 80, left hemisphere 366.8
1955 Male, age 76, both hemispheres 336.7
2243 Female, age 91, right hemisphere 323.2
Central amygdala
nTPM: 421.9
2826 Female, age 94, left hemisphere 649.8
2515 Male, age 75, right hemisphere 400.1
1905 Male, age 76, both hemispheres 374.9
2239 Male, age 80, left hemisphere 343.1
2701 Female, age 91, right hemisphere 341.4
Corticomedial amygdala
nTPM: 362.7
2240 Male, age 76, both hemispheres 405.2
2535 Female, age 67, right hemisphere 386.1
2829 Male, age 80, left hemisphere 365.7
2428 Male, age 75, right hemisphere 349.7
2429 Female, age 94, left hemisphere 347.4
2242 Female, age 91, right hemisphere 322.2
Lateral amygdala
nTPM: 445.2
2830 Female, age 67, right hemisphere 656.0
2516 Male, age 75, right hemisphere 553.5
2534 Female, age 94, left hemisphere 487.5
2256 Male, age 80, left hemisphere 362.3
1883 Male, age 76, both hemispheres 326.3
2255 Female, age 91, right hemisphere 285.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1882.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 1882.8
Samples: 152

Max nTPM: 6989.1
Min nTPM: 918.2
Std nTPM: 848.6
Median nTPM: 1723.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 6989.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 5613.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 5117.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 4352.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 3666.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 3577.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 3540.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 3502.5
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 3298.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 3251.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 3161.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 3061.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 2817.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 2809.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 2789.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 2725.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 2716.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 2712.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 2703.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 2703.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 2560.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 2505.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 2488.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 2426.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 2384.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 2356.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 2334.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 2312.1
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 2293.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 2285.6
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 2275.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 2224.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 2203.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 2156.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 2149.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 2113.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 2094.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 2089.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 2076.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 2042.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 2021.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 2007.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 2004.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 1985.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 1984.7
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 1970.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 1953.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 1939.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 1938.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 1937.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 1933.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 1928.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 1925.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 1919.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 1899.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 1876.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 1865.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 1852.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 1852.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 1836.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 1834.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 1826.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 1819.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 1818.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 1809.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 1805.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 1796.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 1787.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 1780.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 1768.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 1764.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 1743.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 1740.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 1736.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 1724.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 1723.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 1722.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 1710.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 1698.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 1684.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 1637.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 1631.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 1629.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 1610.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 1609.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 1591.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 1588.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 1586.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 1585.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 1580.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 1564.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 1552.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 1542.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 1532.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 1524.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 1517.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 1502.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 1500.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 1487.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 1484.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 1476.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 1472.6
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 1469.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 1458.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 1454.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 1453.7
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 1451.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 1420.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 1414.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 1412.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 1407.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 1402.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 1356.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 1351.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 1348.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 1345.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 1344.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 1327.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 1312.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 1297.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 1286.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 1280.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 1267.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 1254.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 1250.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 1249.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 1229.1
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 1216.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 1211.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 1209.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 1189.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 1181.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 1176.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 1174.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 1170.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 1164.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 1148.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 1148.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 1137.1
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 1126.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 1124.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 1119.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 1117.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 1110.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 1086.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1062.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 1054.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 1033.6
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 955.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 951.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 928.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 918.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

90.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 90.3
FF:10151-102I7 76 years, female 90.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

249.0
Pig sample Sample description nTPM
Amygdala
nTPM: 249.0
Samples: 4

Max nTPM: 330.8
Min nTPM: 127.4
Sample A Female 301.2
Sample B Female 330.8
Sample C Male 236.7
Sample D Male 127.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1593.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 1593.2
Samples: 4

Max nTPM: 1678.9
Min nTPM: 1456.4
Sample A Male 1456.4
Sample B Male 1650.5
Sample C Female 1678.9
Sample D Female 1587.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

10.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 10.4
69816792 Antisense, RP_050510_01_H06, Mouse strain C57BL/6J (56 days, male) 10.4

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