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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1592.0 nTPM
GTEx:1592.0 nTPM
FANTOM5:241.8 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA069064
Squamous epithelial cells Medium


VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1592.0
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1592.0
Samples: 156

Max nTPM: 3742.3
Min nTPM: 812.9
Std nTPM: 420.2
Median nTPM: 1524.0
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 3742.3
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 2892.0
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 2762.9
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 2724.7
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 2587.1
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 2580.1
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 2471.6
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 2267.3
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 2241.3
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 2226.2
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 2120.4
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 2108.8
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 2089.3
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 2084.4
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 2071.9
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 2049.3
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 2044.9
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 2033.0
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 2017.0
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 1998.0
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 1997.6
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 1997.4
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 1995.9
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 1979.1
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 1978.0
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1963.1
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 1933.1
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1921.8
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 1921.6
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1907.9
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 1883.1
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 1874.3
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 1867.0
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 1859.7
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1857.1
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 1852.0
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 1851.2
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1845.0
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 1841.7
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 1811.4
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 1809.1
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1801.1
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 1799.7
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1780.0
GTEX-16NPV-2526-SM-6M483 50-59 years, female 1769.5
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 1761.6
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1758.6
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1753.4
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 1752.9
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1738.6
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 1725.0
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1723.1
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1714.2
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1710.7
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 1689.1
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1687.0
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1685.5
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1685.0
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1671.9
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1657.6
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1643.1
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1636.7
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1635.7
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1625.7
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1618.1
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1609.8
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1600.7
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1597.6
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 1595.8
GTEX-11I78-2026-SM-5987C 50-59 years, female 1584.9
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1582.0
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1566.2
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1563.1
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1557.6
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1551.6
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1547.7
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1541.4
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1526.1
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1522.0
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1513.7
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1512.9
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 1506.5
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 1505.9
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1493.4
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1483.3
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1482.1
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1481.6
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1480.5
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1477.7
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 1474.7
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 1467.3
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1465.2
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1464.2
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1450.2
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1448.8
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 1448.2
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 1447.8
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1418.5
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1409.5
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1406.1
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 1402.6
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1388.3
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1388.1
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 1380.1
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1369.1
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 1363.6
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1353.4
GTEX-1C475-0526-SM-793AC 40-49 years, female 1351.6
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1347.2
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1345.5
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1335.1
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1332.4
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1327.3
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1324.6
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1318.1
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1314.5
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1309.7
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1305.2
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1301.4
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1293.5
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1289.9
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 1286.5
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1273.3
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1265.6
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1252.5
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1247.9
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1239.4
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1239.1
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1226.1
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1225.1
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1213.9
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1208.0
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1205.1
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1192.9
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1182.1
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1169.8
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1163.1
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1151.8
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1140.0
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1128.7
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1102.6
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1100.7
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1099.3
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1084.5
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1078.2
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1068.9
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1055.7
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 1053.5
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1050.1
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1046.6
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 983.3
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 964.0
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 956.5
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 942.2
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 927.6
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 812.9
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

241.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 241.8
FF:10204-103F6 68 years, female 241.8

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