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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:85.4 nTPM
HPA Brain:58.7 nTPM
GTEx:85.4 nTPM
FANTOM5:117.8 Scaled Tags Per Million
Pig:22.5 nTPM
Mouse:98.9 nTPM
Allen mouse:17.0 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

58.7
Sample id Sample description nTPM
Amygdala
nTPM: 53.5
2514 Male, age 75, right hemisphere 57.7
1987 Female, age 91, left hemisphere 56.5
2517 Female, age 94, left hemisphere 53.1
2814 Male, age 76, right hemisphere 51.6
2695 Female, age 67, right hemisphere 48.6
Basal amygdala
nTPM: 53.8
2243 Female, age 91, right hemisphere 61.6
2110 Male, age 80, left hemisphere 57.5
2609 Male, age 75, right hemisphere 57.5
2685 Female, age 94, left hemisphere 53.7
1955 Male, age 76, both hemispheres 51.4
2827 Female, age 67, right hemisphere 41.0
Central amygdala
nTPM: 51.3
2239 Male, age 80, left hemisphere 59.5
2701 Female, age 91, right hemisphere 57.1
2515 Male, age 75, right hemisphere 49.0
1905 Male, age 76, both hemispheres 48.0
2826 Female, age 94, left hemisphere 42.8
Corticomedial amygdala
nTPM: 58.7
2242 Female, age 91, right hemisphere 70.1
2829 Male, age 80, left hemisphere 67.4
2429 Female, age 94, left hemisphere 58.6
2240 Male, age 76, both hemispheres 58.3
2428 Male, age 75, right hemisphere 51.1
2535 Female, age 67, right hemisphere 46.8
Lateral amygdala
nTPM: 46.6
2516 Male, age 75, right hemisphere 51.2
1883 Male, age 76, both hemispheres 49.5
2256 Male, age 80, left hemisphere 47.2
2255 Female, age 91, right hemisphere 46.7
2534 Female, age 94, left hemisphere 42.8
2830 Female, age 67, right hemisphere 42.4

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

85.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 85.4
Samples: 152

Max nTPM: 267.0
Min nTPM: 36.3
Std nTPM: 30.8
Median nTPM: 79.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 267.0
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 197.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 175.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 171.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 167.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 161.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 153.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 130.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 129.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 128.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 127.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 127.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 123.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 121.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 119.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 118.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 117.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 117.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 117.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 115.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 114.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 111.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 109.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 108.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 107.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 106.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 105.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 105.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 105.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 104.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 103.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 101.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 101.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 98.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 97.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 97.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 95.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 94.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 94.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 93.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 93.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 93.5
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 93.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 92.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 92.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 91.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 91.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 91.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 90.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 90.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 90.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 90.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 89.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 89.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 88.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 88.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 87.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 87.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 87.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 87.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 86.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 86.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 86.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 86.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 84.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 84.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 84.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 84.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 83.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 82.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 82.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 82.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 81.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 81.7
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 81.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 79.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 79.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 79.4
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 79.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 79.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 79.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 79.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 78.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 77.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 77.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 76.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 76.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 75.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 74.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 74.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 73.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 73.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 72.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 71.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 70.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 70.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 69.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 69.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 69.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 69.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 68.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 68.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 67.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 67.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 67.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 67.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 66.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 66.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 66.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 66.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 66.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 66.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 65.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 65.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 65.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 65.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 63.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 62.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 62.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 61.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 61.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 61.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 61.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 60.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 60.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 60.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 60.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 60.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 60.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 59.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 59.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 59.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 59.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 58.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 58.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 57.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 56.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 56.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 56.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 54.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 54.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 53.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 53.2
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 52.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 51.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 50.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 49.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 49.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 49.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 48.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 42.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 36.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

117.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 117.8
FF:10151-102I7 76 years, female 117.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

22.5
Pig sample Sample description nTPM
Amygdala
nTPM: 22.5
Samples: 4

Max nTPM: 27.4
Min nTPM: 19.7
Sample A Female 27.4
Sample B Female 20.9
Sample C Male 19.7
Sample D Male 22.1

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

98.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 98.9
Samples: 4

Max nTPM: 102.4
Min nTPM: 95.5
Sample A Male 95.5
Sample B Male 102.4
Sample C Female 100.4
Sample D Female 97.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

17.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 17.0
76081944 Antisense, RP_060626_01_B04, Mouse strain C57BL/6J (56 days, male) 17.0

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