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  • H3-3A
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:247.9 nTPM
FANTOM5:23.0 Scaled Tags Per Million
Pig:118.7 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA042570Antibody CAB011481Antibody CAB037178
Glial cells HighHighHigh
Neuronal cells HighMediumHigh







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

247.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 247.9
Samples: 246

Max nTPM: 556.2
Min nTPM: 135.1
Std nTPM: 59.4
Median nTPM: 242.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 556.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 537.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 482.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 471.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 405.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 382.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 381.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 380.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 352.2
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 349.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 347.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 341.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 339.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 336.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 334.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 334.1
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 330.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 324.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 322.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 322.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 321.0
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 318.4
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 318.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 317.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 317.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 315.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 311.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 310.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 310.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 309.7
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 309.5
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 307.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 307.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 305.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 304.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 304.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 301.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 301.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 298.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 298.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 297.0
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 294.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 293.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 292.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 291.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 290.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 287.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 287.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 286.1
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 284.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 283.2
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 281.6
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 281.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 280.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 280.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 279.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 278.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 278.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 277.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 277.3
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 277.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 276.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 276.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 275.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 273.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 271.0
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 270.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 269.9
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 269.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 268.8
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 268.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 267.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 267.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 266.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 266.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 265.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 265.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 264.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 264.3
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 264.0
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 263.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 263.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 263.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 263.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 263.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 262.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 262.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 262.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 262.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 262.3
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 260.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 260.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 258.9
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 256.7
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 256.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 255.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 255.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 254.0
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 253.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 253.3
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 252.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 251.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 251.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 251.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 250.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 250.6
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 250.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 248.5
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 248.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 247.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 247.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 247.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 247.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 246.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 245.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 245.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 244.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 243.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 242.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 242.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 242.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 242.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 242.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 242.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 240.6
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 240.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 240.3
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 240.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 240.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 239.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 238.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 238.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 237.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 237.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 237.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 237.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 236.9
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 236.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 232.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 232.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 231.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 231.0
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 230.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 230.2
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 228.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 226.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 225.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 224.6
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 224.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 223.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 222.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 222.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 221.6
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 221.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 220.2
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 219.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 219.6
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 219.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 218.9
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 218.4
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 217.7
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 217.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 215.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 215.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 215.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 215.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 214.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 214.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 213.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 213.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 213.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 213.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 213.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 212.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 212.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 212.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 211.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 211.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 211.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 210.7
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 210.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 210.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 209.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 208.6
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 208.6
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 208.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 207.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 207.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 207.1
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 206.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 205.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 205.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 204.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 203.7
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 203.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 203.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 203.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 202.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 200.8
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 200.6
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 200.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 199.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 199.6
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 199.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 197.0
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 195.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 193.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 193.7
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 193.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 192.5
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 191.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 191.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 190.7
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 190.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 189.8
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 189.0
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 187.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 184.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 184.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 184.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 182.9
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 182.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 182.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 181.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 181.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 181.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 180.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 180.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 180.6
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 180.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 180.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 175.6
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 174.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 172.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 171.8
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 170.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 169.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 167.8
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 167.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 165.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 159.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 159.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 157.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 155.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 139.8
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 135.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

23.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 23.0
FF:10164-103B2 76 years, female 23.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

118.7
Pig sample Sample description nTPM
Caudate
nTPM: 118.7
Samples: 4

Max nTPM: 137.7
Min nTPM: 102.7
Sample A Female 137.7
Sample B Female 113.0
Sample C Male 121.3
Sample D Male 102.7

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