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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:396.2 nTPM
GTEx:396.2 nTPM
FANTOM5:25.8 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA042570Antibody CAB011481Antibody CAB037178
Squamous epithelial cells HighHighHigh






VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

396.2
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 396.2
Samples: 156

Max nTPM: 726.7
Min nTPM: 168.1
Std nTPM: 116.8
Median nTPM: 378.0
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 726.7
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 724.2
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 691.9
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 678.5
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 638.1
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 619.5
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 618.1
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 613.4
GTEX-11I78-2026-SM-5987C 50-59 years, female 596.7
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 578.8
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 567.2
GTEX-S341-1226-SM-4AD5S 40-49 years, female 563.6
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 559.1
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 554.8
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 554.8
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 548.6
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 542.3
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 542.2
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 539.8
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 539.1
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 538.9
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 532.0
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 531.8
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 527.3
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 526.5
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 521.8
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 520.9
GTEX-14PKU-1326-SM-6871B 40-49 years, female 520.5
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 514.7
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 510.3
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 509.1
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 505.8
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 502.7
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 500.0
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 499.8
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 498.6
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 497.6
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 488.7
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 484.3
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 481.3
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 479.7
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 478.8
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 474.5
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 473.6
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 472.4
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 472.2
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 470.7
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 462.9
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 459.0
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 457.6
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 456.6
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 442.0
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 440.5
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 439.3
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 438.1
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 430.1
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 429.6
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 427.8
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 426.7
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 425.5
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 424.1
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 419.7
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 419.4
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 416.9
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 410.0
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 406.3
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 406.1
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 403.2
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 400.1
GTEX-1C475-0526-SM-793AC 40-49 years, female 399.0
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 397.8
GTEX-16NPV-2526-SM-6M483 50-59 years, female 395.7
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 395.4
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 393.2
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 393.1
GTEX-QCQG-1226-SM-48U23 50-59 years, female 384.1
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 383.6
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 379.4
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 376.7
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 376.6
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 372.2
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 371.6
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 363.5
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 362.7
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 358.4
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 354.0
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 353.1
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 353.0
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 350.4
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 349.0
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 349.0
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 347.6
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 339.9
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 339.3
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 334.6
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 333.0
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 331.7
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 330.8
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 328.9
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 328.7
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 322.6
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 322.6
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 318.2
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 317.9
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 317.9
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 316.3
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 315.9
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 313.8
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 313.3
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 310.9
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 309.2
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 308.3
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 306.5
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 305.6
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 304.6
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 303.2
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 301.0
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 299.9
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 299.4
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 298.9
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 295.9
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 294.8
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 294.7
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 294.6
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 292.7
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 290.4
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 290.3
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 289.6
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 286.3
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 285.4
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 284.7
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 281.6
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 277.6
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 275.2
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 274.0
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 273.0
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 270.4
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 265.7
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 265.0
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 260.9
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 258.3
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 258.0
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 254.0
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 248.1
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 247.1
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 246.8
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 245.6
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 244.8
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 243.2
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 235.7
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 234.7
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 229.7
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 228.7
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 215.3
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 207.0
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 168.1
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

25.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 25.8
FF:10204-103F6 68 years, female 25.8

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