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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
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VALIDATION
Dictionary
Tissue proteome
Eye
Retina
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:263.3 nTPM
GTEx:263.3 nTPM
FANTOM5:38.7 Scaled Tags Per Million
Pig:223.0 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

263.3
GTEx sample id Sample description nTPM
Retina
Average nTPM: 263.3
Samples: 105

Max nTPM: 655.3
Min nTPM: 62.5
Std nTPM: 124.4
Median nTPM:
2_1 77 years, female 655.3
117_1 61 years, male 560.6
6_1 73 years, female 549.7
17_1 71 years, male 536.1
4_1 88 years, female 520.9
119_1 70 years, female 512.0
145_1 84 years, male 508.7
162_1 79 years, female 492.6
35_1 74 years, female 475.8
99_1 64 years, male 464.8
142_1 61 years, female 463.2
126_1 63 years, male 460.9
139_1 64 years, female 457.0
137_1 83 years, male 448.9
120_1 70 years, female 441.6
89_1 63 years, male 440.4
42_1 85 years, male 439.4
9_1 66 years, female 428.9
115_1 83 years, male 418.1
153_1 70 years, female 409.2
109_1 81 years, female 399.3
18_1 88 years, male 392.3
32_1 67 years, male 374.2
81_1 67 years, male 340.1
43_1 64 years, female 339.6
322_1 76 years, male 328.2
149_1 88 years, male 301.5
315_1 62 years, female 287.6
495_1 57 years, female 279.9
311_1 78 years, male 275.3
293_1 68 years, female 273.0
490_1 67 years, female 271.3
319_1 81 years, male 270.7
320_1 89 years, female 268.4
503_1 68 years, male 266.3
218_1 71 years, female 264.5
307_1 66 years, female 258.8
506_1 65 years, male 251.7
499_1 55 years, female 247.6
348_1 84 years, male 245.9
356_1 87 years, female 243.1
217_1 76 years, male 240.3
491_1 89 years, female 240.3
351_1 91 years, male 240.2
447_1 81 years, male 237.7
317_1 60 years, male 237.2
243_1 75 years, male 235.6
517_1 88 years, male 233.3
316_1 62 years, male 232.9
321_1 62 years, female 229.5
480_1 63 years, male 229.1
526_1 61 years, male 228.8
173_1 67 years, male 227.3
352_1 62 years, male 226.8
518_1 75 years, female 225.0
314_1 67 years, male 224.1
386_1 76 years, male 223.8
291_1 76 years, male 223.0
350_1 84 years, female 220.5
468_1 89 years, male 219.5
353_1 82 years, female 219.1
254_1 77 years, female 218.5
354_1 81 years, female 213.1
251_1 78 years, male 206.7
415_1 77 years, female 205.6
335_1 73 years, female 203.3
324_1 76 years, male 201.5
295_1 61 years, female 201.3
172_1 72 years, female 201.0
313_1 79 years, female 197.8
266_1 85 years, male 191.0
292_1 71 years, male 190.2
163_1 78 years, male 186.3
355_1 70 years, female 184.3
377_1 82 years, female 182.5
347_1 72 years, male 181.4
288_1 66 years, female 181.3
349_1 83 years, male 177.3
384_1 83 years, male 175.8
406_1 79 years, male 175.6
389_1 86 years, female 172.7
375_1 74 years, female 171.7
376_1 75 years, female 169.9
237_1 82 years, male 167.4
177_1 74 years, male 164.3
286_1 68 years, female 163.3
41_1 94 years, female 159.7
425_1 59 years, female 158.9
318_1 68 years, male 158.4
264_1 73 years, female 149.7
396_1 62 years, male 147.6
308_1 70 years, female 145.8
452_1 88 years, female 144.0
405_1 91 years, male 143.3
189_1 76 years, male 140.3
265_1 87 years, male 140.3
394_1 75 years, female 139.4
501_1 88 years, male 139.4
404_1 82 years, female 133.5
466_1 57 years, female 131.9
379_1 60 years, male 126.9
229_1 69 years, female 110.9
246_1 77 years, male 103.6
414_1 84 years, female 68.2
413_1 59 years, female 62.5
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

38.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 38.7
FF:10030-101E3 24-65 years, mixed 38.7

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

223.0
Pig sample Sample description nTPM
Retina
nTPM: 223.0
Samples: 4

Max nTPM: 258.0
Min nTPM: 180.7
Sample A Female 208.3
Sample B Female 258.0
Sample C Male 245.1
Sample D Male 180.7

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