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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:143.0 nTPM
HPA Brain:124.9 nTPM
GTEx:143.0 nTPM
FANTOM5:232.4 Scaled Tags Per Million
Pig:65.5 nTPM
Mouse:27.9 nTPM
Allen mouse:3.4 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

124.9
Sample id Sample description nTPM
Amygdala
nTPM: 124.9
2695 Female, age 67, right hemisphere 163.1
2814 Male, age 76, right hemisphere 162.3
1987 Female, age 91, left hemisphere 125.3
2517 Female, age 94, left hemisphere 93.7
2514 Male, age 75, right hemisphere 79.9
Basal amygdala
nTPM: 91.2
1955 Male, age 76, both hemispheres 131.1
2110 Male, age 80, left hemisphere 118.5
2827 Female, age 67, right hemisphere 104.9
2609 Male, age 75, right hemisphere 73.6
2685 Female, age 94, left hemisphere 60.6
2243 Female, age 91, right hemisphere 58.5
Central amygdala
nTPM: 124.2
2826 Female, age 94, left hemisphere 170.2
2515 Male, age 75, right hemisphere 148.7
1905 Male, age 76, both hemispheres 133.6
2239 Male, age 80, left hemisphere 96.9
2701 Female, age 91, right hemisphere 71.4
Corticomedial amygdala
nTPM: 78.2
2240 Male, age 76, both hemispheres 90.1
2428 Male, age 75, right hemisphere 83.0
2242 Female, age 91, right hemisphere 82.8
2829 Male, age 80, left hemisphere 82.8
2535 Female, age 67, right hemisphere 75.3
2429 Female, age 94, left hemisphere 55.3
Lateral amygdala
nTPM: 118.8
1883 Male, age 76, both hemispheres 142.9
2830 Female, age 67, right hemisphere 134.7
2256 Male, age 80, left hemisphere 125.8
2534 Female, age 94, left hemisphere 121.6
2255 Female, age 91, right hemisphere 94.8
2516 Male, age 75, right hemisphere 92.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

143.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 143.0
Samples: 152

Max nTPM: 955.6
Min nTPM: 47.4
Std nTPM: 93.4
Median nTPM: 121.0
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 955.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 482.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 369.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 314.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 303.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 287.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 286.1
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 279.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 263.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 256.2
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 254.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 250.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 233.6
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 231.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 231.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 230.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 225.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 219.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 217.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 215.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 208.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 206.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 198.5
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 194.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 192.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 188.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 182.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 181.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 180.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 180.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 179.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 178.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 177.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 177.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 177.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 176.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 171.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 170.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 168.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 167.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 167.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 164.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 161.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 161.4
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 160.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 160.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 160.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 159.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 158.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 156.7
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 154.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 152.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 151.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 148.8
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 148.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 143.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 142.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 142.7
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 141.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 140.3
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 140.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 139.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 137.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 133.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 133.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 131.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 130.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 128.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 128.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 127.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 127.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 126.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 125.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 125.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 125.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 121.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 120.6
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 114.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 114.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 113.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 112.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 112.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 111.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 111.1
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 109.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 109.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 109.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 108.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 107.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 107.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 106.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 106.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 106.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 106.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 104.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 104.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 103.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 102.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 102.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 100.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 99.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 99.0
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 98.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 98.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 97.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 97.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 96.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 95.8
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 94.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 94.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 93.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 91.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 90.7
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 90.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 89.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 89.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 88.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 87.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 87.6
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 87.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 86.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 86.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 85.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 85.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 84.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 84.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 83.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 82.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 82.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 81.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 79.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 79.3
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 79.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 78.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 77.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 76.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 75.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 73.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 73.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 72.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 69.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 68.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 67.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 66.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 64.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 62.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 60.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 58.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 57.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 57.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 48.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 47.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

232.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 232.4
FF:10151-102I7 76 years, female 232.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

65.5
Pig sample Sample description nTPM
Amygdala
nTPM: 65.5
Samples: 4

Max nTPM: 80.2
Min nTPM: 49.8
Sample A Female 80.2
Sample B Female 49.8
Sample C Male 74.6
Sample D Male 57.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

27.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 28.0
Samples: 4

Max nTPM: 39.9
Min nTPM: 19.9
Sample A Male 22.8
Sample B Male 19.9
Sample C Female 39.9
Sample D Female 29.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

3.4
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.4
81654139 Antisense, RP_090205_01_B05, Mouse strain C57BL/6J (56 days, male) 3.4

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