MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:196.8 nTPM
HPA Brain:209.7 nTPM
GTEx:196.8 nTPM
FANTOM5:546.0 Scaled Tags Per Million
Pig:154.7 nTPM
Mouse:28.5 nTPM
Allen mouse:3.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 209.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 136.8
2828 Female, age 72, unknown 183.7
2019 Male, age 18, unknown 161.9
2586 Male, age 75, left hemisphere 143.1
2666 Male, age 74, left hemisphere 139.2
1833 Male, age 53, unknown 136.8
1827 Male, age 72, unknown 136.3
1830 Male, age 51, unknown 135.0
1870 Female, age 42, unknown 130.7
2411 Female, age 72, unknown 120.8
2219 Male, age 76, both hemispheres 80.9
Dorsal raphe nucleus
nTPM: 171.8
2016 Female, age 72, unknown 205.6
1828 Male, age 53, unknown 171.8
2047 Male, age 72, unknown 170.6
2298 Female, age 72, unknown 168.9
2750 Male, age 76, both hemispheres 141.9
Inferior colliculus
nTPM: 191.7
1848 Female, age 42, unknown 216.4
2097 Female, age 72, unknown 203.8
1890 Male, age 53, unknown 196.1
2849 Male, age 72, unknown 150.3
Median raphe nucleus
nTPM: 105.1
2220 Male, age 76, midline 105.1
Periaquaductal grey, anterior
nTPM: 175.8
2502 Female, age 75, unknown 191.7
1947 Male, age 18, unknown 175.2
1795 Male, age 51, unknown 160.5
Periaquaductal grey, dorsal
nTPM: 143.0
2464 Female, age 72, unknown 155.7
1840 Male, age 53, unknown 152.6
2850 Male, age 76, both hemispheres 142.0
1831 Male, age 72, unknown 121.8
Periaquaductal grey, lateral
nTPM: 209.7
2272 Male, age 74, both hemispheres 294.8
2140 Male, age 76, both hemispheres 182.1
2053 Male, age 18, unknown 152.1
Pretectal area
nTPM: 137.0
2273 Male, age 74, both hemispheres 173.4
1817 Female, age 42, unknown 165.9
2224 Female, age 72, unknown 156.9
2316 Male, age 76, right hemisphere 151.0
2667 Female, age 75, unknown 140.1
1816 Male, age 51, unknown 132.5
2825 Male, age 18, unknown 126.2
1944 Female, age 72, unknown 117.9
1815 Male, age 53, unknown 115.8
2407 Male, age 75, both hemispheres 113.6
2007 Male, age 72, unknown 113.5
Red nucleus
nTPM: 189.8
2227 Male, age 72, unknown 257.6
2769 Male, age 72, unknown 238.7
1821 Female, age 72, unknown 208.1
1954 Female, age 42, unknown 206.9
2503 Female, age 72, unknown 192.0
1865 Male, age 51, unknown 187.3
1904 Male, age 53, unknown 187.1
2823 Male, age 76, right hemisphere 183.0
2725 Female, age 75, unknown 182.4
2785 Male, age 18, unknown 164.6
2588 Male, age 74, left hemisphere 160.9
2584 Male, age 75, left hemisphere 108.9
Substantia nigra
nTPM: 125.4
2699 Male, age 18, unknown 149.5
2665 Male, age 74, both hemispheres 148.8
1851 Male, age 51, unknown 143.2
1889 Female, age 72, unknown 133.4
2590 Female, age 75, unknown 124.5
1916 Female, age 42, unknown 120.9
1941 Male, age 53, unknown 115.6
2241 Male, age 72, unknown 112.2
2583 Male, age 75, right hemisphere 104.2
2409 Female, age 72, unknown 101.5
Superior colliculus
nTPM: 139.1
2261 Male, age 18, unknown 153.6
2587 Male, age 74, left hemisphere 151.0
1995 Male, age 72, unknown 149.8
2087 Female, age 72, unknown 145.7
1839 Male, age 51, unknown 141.9
1895 Male, age 76, right hemisphere 141.4
1796 Male, age 53, unknown 134.0
1913 Female, age 42, unknown 132.7
2668 Female, age 75, unknown 124.8
2664 Male, age 75, both hemispheres 115.8
Ventral tegmental area
nTPM: 137.5
2223 Female, age 72, unknown 160.4
2021 Male, age 53, unknown 155.4
1915 Female, age 42, unknown 141.1
1942 Male, age 51, unknown 127.7
2410 Female, age 72, unknown 123.3
2218 Male, age 76, both hemispheres 117.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 196.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 196.8
Samples: 139

Max nTPM: 557.3
Min nTPM: 54.8
Std nTPM: 92.4
Median nTPM: 173.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 557.3
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 522.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 512.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 426.2
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 391.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 389.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 379.0
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 359.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 350.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 347.7
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 347.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 546.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 546.0
FF:10158-103A5 76 years, female 546.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 154.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 127.0
Samples: 4

Max nTPM: 211.2
Min nTPM: 73.8
Sample A Female 117.8
Sample B Female 211.2
Sample C Male 73.8
Sample D Male 105.2
Midbrain
nTPM: 99.5
Samples: 4

Max nTPM: 128.4
Min nTPM: 72.6
Sample A Female 116.7
Sample B Female 72.6
Sample C Male 128.4
Sample D Male 80.4
Periaqueductal gray
nTPM: 69.1
Samples: 3

Max nTPM: 79.1
Min nTPM: 59.9
Sample B Female 68.2
Sample C Male 79.1
Sample D Male 59.9
Superior colliculi
nTPM: 154.8
Samples: 4

Max nTPM: 252.5
Min nTPM: 111.8
Sample A Female 136.8
Sample B Female 252.5
Sample C Male 111.8
Sample D Male 117.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 28.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 28.6
Samples: 4

Max nTPM: 30.3
Min nTPM: 26.4
Sample A Male 26.4
Sample B Male 28.8
Sample C Female 28.7
Sample D Female 30.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.5
81654139 Antisense, RP_090205_01_B05, Mouse strain C57BL/6J (56 days, male) 3.5

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