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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:162.9 nTPM
FANTOM5:313.2 Scaled Tags Per Million
Pig:77.9 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA002196Antibody CAB020668
Glial cells LowNot detected
Neuronal cells MediumNot detected




CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

162.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 162.9
Samples: 246

Max nTPM: 619.9
Min nTPM: 36.0
Std nTPM: 83.5
Median nTPM: 146.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 619.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 573.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 416.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 408.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 378.8
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 354.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 350.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 329.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 318.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 318.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 307.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 305.8
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 298.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 294.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 291.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 288.4
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 288.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 285.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 283.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 280.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 278.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 278.8
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 278.8
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 276.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 274.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 273.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 270.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 263.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 260.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 260.9
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 256.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 256.3
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 256.2
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 255.3
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 253.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 252.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 252.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 249.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 246.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 243.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 241.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 234.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 233.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 232.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 231.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 230.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 228.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 228.6
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 223.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 222.8
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 218.8
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 218.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 217.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 217.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 215.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 215.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 214.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 212.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 211.3
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 211.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 210.7
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 209.0
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 205.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 203.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 200.8
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 200.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 200.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 198.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 194.5
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 192.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 192.3
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 191.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 191.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 191.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 190.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 189.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 185.9
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 185.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 184.8
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 183.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 181.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 180.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 179.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 178.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 178.3
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 177.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 175.3
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 174.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 173.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 173.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 169.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 169.3
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 168.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 168.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 168.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 168.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 168.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 166.8
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 166.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 165.9
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 165.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 163.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 162.8
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 162.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 162.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 161.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 158.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 157.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 156.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 154.4
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 154.2
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 152.2
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 151.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 151.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 151.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 149.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 148.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 148.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 147.9
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 147.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 147.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 146.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 146.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 145.8
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 145.2
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 144.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 143.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 143.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 142.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 141.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 139.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 139.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 137.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 137.0
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 136.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 135.9
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 135.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 135.5
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 134.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 133.8
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 133.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 132.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 130.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 129.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 128.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 127.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 127.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 126.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 126.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 125.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 125.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 125.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 124.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 124.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 123.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 123.1
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 120.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 120.8
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 120.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 117.9
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 117.9
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 117.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 117.0
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 116.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 115.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 115.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 115.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 115.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 113.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 112.7
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 112.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 112.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 111.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 111.4
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 111.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 110.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 110.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 110.1
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 109.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 109.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 108.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 108.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 108.2
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 107.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 106.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 106.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 106.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 105.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 104.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 104.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 100.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 99.3
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 99.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 99.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 97.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 95.9
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 94.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 94.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 94.1
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 93.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 93.5
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 93.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 91.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 88.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 88.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 88.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 87.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 86.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 86.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 85.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 84.5
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 84.2
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 83.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 81.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 79.6
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 79.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 78.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 77.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 76.5
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 76.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 75.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 74.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 74.1
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 72.0
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 71.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 70.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 69.4
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 69.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 68.5
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 68.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 67.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 67.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 67.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 64.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 63.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 61.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 59.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 58.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 57.7
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 56.7
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 54.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 53.7
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 52.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 40.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 37.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 36.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

313.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 313.2
FF:10164-103B2 76 years, female 313.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

77.9
Pig sample Sample description nTPM
Caudate
nTPM: 77.9
Samples: 4

Max nTPM: 98.0
Min nTPM: 62.3
Sample A Female 62.3
Sample B Female 70.8
Sample C Male 98.0
Sample D Male 80.5

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