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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glandular cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:220.2 nTPM
HPA:220.2 nTPM
GTEx:205.8 nTPM
FANTOM5:302.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA008352Antibody CAB001994
Glandular cells HighLow





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

220.2
overview
Male, age 65
Small intestine sample 232
nTPM: 192.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 244.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 212.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 230.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

205.8
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 205.8
Samples: 187

Max nTPM: 410.0
Min nTPM: 115.6
Std nTPM: 43.5
Median nTPM: 200.4
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 410.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 366.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 346.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 340.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 322.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 321.4
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 310.0
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 289.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 289.1
GTEX-111YS-1426-SM-5GID8 60-69 years, male 282.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 281.4
GTEX-YFCO-1326-SM-664NV 40-49 years, male 280.4
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 278.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 277.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 271.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 265.1
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 262.5
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 262.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 257.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 254.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 253.6
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 252.0
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 248.1
GTEX-183FY-1626-SM-793D8 20-29 years, male 242.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 242.4
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 241.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 240.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 239.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 238.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 238.2
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 237.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 237.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 236.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 235.6
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 235.0
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 233.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 233.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 233.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 232.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 231.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 231.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 231.5
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 230.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 227.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 226.5
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 225.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 224.9
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 224.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 223.7
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 223.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 220.8
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 220.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 220.6
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 220.2
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 219.0
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 217.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 216.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 215.9
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 215.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 214.5
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 213.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 213.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 213.4
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 212.7
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 211.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 211.4
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 210.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 210.8
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 209.3
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 209.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 208.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 208.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 207.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 207.2
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 206.6
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 206.2
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 206.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 205.9
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 205.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 204.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 204.3
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 204.0
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 203.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 203.3
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 203.2
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 202.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 202.2
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 202.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 201.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 201.6
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 201.2
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 200.7
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 200.5
GTEX-1192X-2526-SM-59868 50-59 years, male 200.4
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 200.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 199.0
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 198.4
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 197.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 197.2
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 197.1
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 197.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 196.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 196.8
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 196.4
GTEX-144GM-1026-SM-79OKU 20-29 years, male 195.6
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 194.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 193.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 193.4
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 193.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 193.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 192.7
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 191.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 190.3
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 190.1
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 189.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 189.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 189.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 189.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 188.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 187.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 186.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 186.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 186.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 186.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 186.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 185.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 185.4
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 185.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 183.6
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 183.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 182.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 182.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 182.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 182.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 182.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 182.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 182.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 182.0
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 181.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 180.7
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 180.4
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 179.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 178.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 178.8
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 177.9
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 177.3
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 176.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 175.6
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 175.2
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 175.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 174.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 174.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 174.0
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 174.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 173.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 173.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 172.4
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 170.6
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 170.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 167.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 166.3
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 166.2
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 165.2
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 162.1
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 161.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 160.9
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 159.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 159.8
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 159.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 157.5
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 156.1
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 155.7
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 155.7
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 154.9
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 152.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 150.0
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 149.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 149.3
GTEX-13113-1226-SM-5EGHT 60-69 years, female 148.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 141.4
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 140.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 139.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 136.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 132.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 130.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 123.2
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 115.6
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

302.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 302.9
FF:10024-101D6 15,40,85 years, mixed 302.9

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