HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:71.9 nTPM
HPA Brain:75.7 nTPM
GTEx:71.9 nTPM
FANTOM5:18.9 Scaled Tags Per Million
Pig:35.4 nTPM
Mouse:134.3 nTPM
Allen mouse:13.9 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 75.7
Sample id Sample description nTPM
Hippocampus
nTPM: 62.9
1911 Female, age 85, right hemisphere 66.2
2529 Female, age 94, left hemisphere 66.2
1898 Male, age 80, left hemisphere 65.3
2621 Female, age 67, right hemisphere 62.5
1855 Male, age 76, left hemisphere 58.6
2148 Female, age 91, left hemisphere 58.5
Dentate gyrus
nTPM: 60.0
2530 Female, age 94, left hemisphere 84.3
2010 Male, age 76, both hemispheres 62.5
2528 Male, age 74, both hemispheres 61.7
2246 Female, age 85, both hemispheres 52.3
2531 Female, age 67, both hemispheres 50.0
1927 Female, age 91, both hemispheres 49.4
Entorhinal gyrus
nTPM: 75.7
2117 Female, age 91, right hemisphere 100.9
2764 Male, age 80, right hemisphere 91.3
2686 Male, age 75, right hemisphere 66.8
2613 Female, age 94, left hemisphere 66.1
1938 Female, age 85, left hemisphere 66.0
1787 Male, age 76, left hemisphere 62.9
Hippocampus, CA1
nTPM: 55.5
2082 Female, age 91, right hemisphere 62.7
2527 Male, age 74, both hemispheres 62.2
1873 Female, age 85, both hemispheres 59.1
2749 Male, age 80, left hemisphere 53.7
2045 Male, age 76, both hemispheres 39.9
Hippocampus, CA2
nTPM: 65.5
1963 Male, age 80, left hemisphere 78.1
2437 Female, age 94, left hemisphere 68.2
1940 Female, age 85, left hemisphere 65.4
2249 Male, age 74, both hemispheres 63.5
2113 Female, age 91, right hemisphere 60.5
1892 Male, age 76, both hemispheres 57.7
Hippocampus, CA3
nTPM: 52.5
1891 Female, age 85, both hemispheres 73.2
1867 Male, age 76, both hemispheres 59.9
2436 Male, age 74, both hemispheres 52.6
2861 Female, age 67, both hemispheres 44.8
2137 Male, age 80, left hemisphere 42.4
2620 Female, age 94, left hemisphere 42.0
Parahippocampal cortex
nTPM: 63.4
2692 Male, age 74, both hemispheres 81.1
2532 Female, age 72, left hemisphere 75.7
1990 Female, age 91, right hemisphere 70.5
2018 Male, age 76, both hemispheres 66.0
1850 Male, age 80, both hemispheres 65.5
1933 Female, age 85, both hemispheres 64.9
2245 Female, age 91, both hemispheres 63.0
2622 Female, age 67, right hemisphere 52.2
2693 Female, age 94, both hemispheres 51.5
2250 Female, age 67, right hemisphere 44.0
Perirhinal gyrus
nTPM: 55.4
1794 Male, age 80, right hemisphere 63.7
1847 Female, age 91, left hemisphere 55.6
2521 Female, age 94, right hemisphere 55.4
1841 Female, age 85, right hemisphere 52.4
2848 Male, age 76, right hemisphere 49.9
Subiculum
nTPM: 75.2
1901 Male, age 80, both hemispheres 84.8
2042 Male, age 76, both hemispheres 82.1
2619 Male, age 74, both hemispheres 75.5
2438 Female, age 94, left hemisphere 73.5
1977 Female, age 85, both hemispheres 71.9
2729 Female, age 91, right hemisphere 63.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 71.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 71.9
Samples: 197

Max nTPM: 148.8
Min nTPM: 14.9
Std nTPM: 22.4
Median nTPM: 69.2
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 148.8
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 135.5
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 133.8
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 125.5
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 125.0
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 123.8
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 116.0
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 115.2
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 113.1
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 111.6
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 110.7
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 18.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 18.9
FF:10153-102I9 76 years, female 22.4
FF:10169-103B7 60 years, female 15.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 35.4
Pig sample Sample description nTPM
Subiculum
nTPM: 27.7
Samples: 4

Max nTPM: 32.3
Min nTPM: 24.1
Sample A Female 32.3
Sample B Female 27.9
Sample C Male 26.5
Sample D Male 24.1
Dorsal hippocampus
nTPM: 35.5
Samples: 4

Max nTPM: 45.7
Min nTPM: 20.6
Sample A Female 45.7
Sample B Female 34.4
Sample C Male 41.1
Sample D Male 20.6
Entorhinal cortex
nTPM: 31.9
Samples: 4

Max nTPM: 36.4
Min nTPM: 25.4
Sample A Female 29.9
Sample B Female 35.7
Sample C Male 36.4
Sample D Male 25.4
Ventral hippocampus
nTPM: 30.6
Samples: 4

Max nTPM: 39.8
Min nTPM: 21.3
Sample A Female 27.3
Sample B Female 21.3
Sample C Male 33.9
Sample D Male 39.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 134.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 134.3
Samples: 4

Max nTPM: 137.2
Min nTPM: 129.1
Sample A Male 129.1
Sample B Male 135.5
Sample C Female 137.2
Sample D Female 135.5
Hippocampal formation
nTPM: 120.7
Samples: 4

Max nTPM: 131.4
Min nTPM: 110.1
Sample A Male 131.4
Sample B Male 110.1
Sample C Female 111.4
Sample D Female 129.9

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 13.9
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 13.9
69080509 Antisense, RP_050324_02_B10, Mouse strain C57BL/6J (56 days, male) 13.9

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org