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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:37.8 nTPM
HPA Brain:202.7 nTPM
GTEx:37.8 nTPM
FANTOM5:185.4 Scaled Tags Per Million
Pig:134.4 nTPM
Mouse:83.3 nTPM
Allen mouse:2.8 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

202.7
Sample id Sample description nTPM
Amygdala
nTPM: 202.7
2814 Male, age 76, right hemisphere 247.7
2514 Male, age 75, right hemisphere 233.2
2517 Female, age 94, left hemisphere 191.0
1987 Female, age 91, left hemisphere 171.4
2695 Female, age 67, right hemisphere 170.3
Basal amygdala
nTPM: 163.0
1955 Male, age 76, both hemispheres 194.1
2110 Male, age 80, left hemisphere 168.4
2609 Male, age 75, right hemisphere 165.4
2685 Female, age 94, left hemisphere 163.5
2827 Female, age 67, right hemisphere 143.5
2243 Female, age 91, right hemisphere 142.9
Central amygdala
nTPM: 175.8
1905 Male, age 76, both hemispheres 249.2
2701 Female, age 91, right hemisphere 172.1
2239 Male, age 80, left hemisphere 168.9
2515 Male, age 75, right hemisphere 156.3
2826 Female, age 94, left hemisphere 132.4
Corticomedial amygdala
nTPM: 164.5
2240 Male, age 76, both hemispheres 198.4
2429 Female, age 94, left hemisphere 188.5
2428 Male, age 75, right hemisphere 180.6
2829 Male, age 80, left hemisphere 157.5
2535 Female, age 67, right hemisphere 140.5
2242 Female, age 91, right hemisphere 121.4
Lateral amygdala
nTPM: 182.4
1883 Male, age 76, both hemispheres 228.6
2516 Male, age 75, right hemisphere 228.4
2255 Female, age 91, right hemisphere 165.2
2830 Female, age 67, right hemisphere 161.5
2534 Female, age 94, left hemisphere 160.4
2256 Male, age 80, left hemisphere 150.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 37.8
Samples: 152

Max nTPM: 73.8
Min nTPM: 7.9
Std nTPM: 9.6
Median nTPM: 36.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 73.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 69.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 63.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 63.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 59.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 58.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 56.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 55.3
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 52.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 51.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 51.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 50.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 49.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 49.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 49.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 48.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 48.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 48.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 48.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 47.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 47.3
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 47.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 47.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 46.5
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 46.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 44.9
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 44.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 44.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 44.2
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 44.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 44.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 43.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 43.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 43.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 43.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 43.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 42.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 42.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 42.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 42.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 42.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 41.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 41.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 41.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 41.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 41.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 40.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 40.7
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 40.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 40.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 40.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 40.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 40.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 40.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 40.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 39.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 39.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 39.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 39.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 39.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 39.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 38.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 38.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 38.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 38.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 38.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 37.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 37.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 37.7
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 37.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 37.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 37.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 37.5
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 37.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 36.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 36.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 36.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 36.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 36.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 36.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 36.6
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 36.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 36.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 36.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 36.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 36.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 36.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 36.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 36.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 35.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 35.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 35.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 35.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 35.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 35.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 35.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 35.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 34.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 34.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 34.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 34.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 34.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 33.9
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 33.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 33.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 33.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 33.1
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 32.9
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 32.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 32.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 32.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 32.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 32.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 32.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 31.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 31.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 31.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 31.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 31.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 31.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 30.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 30.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 30.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 30.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 30.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 30.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 30.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 29.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 29.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 29.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 29.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 28.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 28.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 28.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 28.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 27.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 27.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 27.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 26.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 26.9
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 26.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 25.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 24.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 24.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 23.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 22.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 22.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 22.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 20.1
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 16.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 12.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 7.9
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

185.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 185.4
FF:10151-102I7 76 years, female 185.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

134.4
Pig sample Sample description nTPM
Amygdala
nTPM: 134.4
Samples: 4

Max nTPM: 149.3
Min nTPM: 119.8
Sample A Female 149.3
Sample B Female 146.1
Sample C Male 119.8
Sample D Male 122.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

83.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 83.3
Samples: 4

Max nTPM: 84.8
Min nTPM: 80.3
Sample A Male 83.4
Sample B Male 80.3
Sample C Female 84.7
Sample D Female 84.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

2.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 2.8
71211477 Antisense, RP_050816_01_F10, Mouse strain C57BL/6J (56 days, male) 4.7
71724852 Antisense, RP_050921_01_H01, Mouse strain C57BL/6J (56 days, male) 0.9

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