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BRAIN MEDULLA OBLONGATA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Medulla oblongata
MEDULLA OBLONGATA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:256.4 nTPM
FANTOM5:199.6 Scaled Tags Per Million
Pig:182.8 nTPM
Allen mouse:3.4 Expression energy

MEDULLA OBLONGATA - Annotated protein expression
Pending normal tissue analysis

MEDULLA OBLONGATA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

256.4
Sample id Sample description nTPM
Area postrema
nTPM: 169.5
2306 Male, age 80, both hemispheres 214.1
2054 Male, age 76, both hemispheres 172.3
2799 Male, age 61, both hemispheres 122.0
Dorsal medullary reticular nucleus
nTPM: 234.1
2040 Female, age 85, both hemispheres 294.6
2088 Male, age 76, both hemispheres 214.2
2373 Male, age 61, both hemispheres 193.6
Dorsal motor vagal complex
nTPM: 190.2
2000 Male, age 74, unknown 250.0
2133 Female, age 91, both hemispheres 237.1
2844 Male, age 55, unknown 207.4
2185 Male, age 76, both hemispheres 202.1
2813 Female, age 72, unknown 180.0
2807 Female, age 85, both hemispheres 169.6
2643 Male, age 74, both hemispheres 157.3
2797 Male, age 61, both hemispheres 118.4
Gigantocellular reticular nuclei, medullary
nTPM: 252.1
2387 Female, age 91, both hemispheres 283.1
1876 Female, age 85, both hemispheres 279.5
2022 Male, age 76, right hemisphere 260.0
2314 Male, age 61, both hemispheres 249.1
2462 Male, age 74, both hemispheres 231.2
2310 Male, age 80, both hemispheres 210.0
Gigantocellular reticular nuclei, pars
nTPM: 222.8
2168 Male, age 76, both hemispheres 261.8
2084 Female, age 85, both hemispheres 237.5
2336 Male, age 61, both hemispheres 229.0
2706 Male, age 80, both hemispheres 199.8
2330 Male, age 80, both hemispheres 185.9
Inferior olive
nTPM: 225.1
2563 Male, age 74, both hemispheres 248.4
2178 Male, age 61, both hemispheres 239.1
2085 Female, age 85, both hemispheres 231.9
2628 Female, age 91, both hemispheres 219.7
2379 Male, age 80, both hemispheres 186.1
Lateral medullary reticular nucleus
nTPM: 247.6
2305 Male, age 74, both hemispheres 315.4
2044 Male, age 76, both hemispheres 263.9
2852 Male, age 80, both hemispheres 245.1
2190 Female, age 85, both hemispheres 233.9
2374 Male, age 61, both hemispheres 216.4
2804 Female, age 91, both hemispheres 210.8
Medial olivary nucleus
nTPM: 246.9
1943 Male, age 61, both hemispheres 280.4
2138 Female, age 91, both hemispheres 254.3
1962 Male, age 76, both hemispheres 251.4
2851 Male, age 80, both hemispheres 201.4
Medial vestibular nucleus
nTPM: 237.7
2803 Female, age 91, both hemispheres 283.4
2801 Male, age 74, both hemispheres 260.1
2093 Male, age 80, both hemispheres 254.3
2743 Female, age 85, both hemispheres 224.7
2624 Male, age 61, both hemispheres 206.9
2134 Male, age 76, both hemispheres 196.5
Motor hypoglossal nucleus
nTPM: 229.4
2125 Female, age 91, both hemispheres 292.2
2132 Female, age 85, both hemispheres 276.0
2182 Male, age 80, both hemispheres 228.8
2461 Male, age 61, both hemispheres 202.0
2277 Male, age 76, both hemispheres 148.2
Nucleus ambiguus
nTPM: 229.9
2071 Male, age 76, both hemispheres 254.1
2096 Female, age 85, both hemispheres 205.8
Nucleus cuneatus
nTPM: 208.9
2380 Male, age 80, both hemispheres 235.7
2381 Male, age 80, both hemispheres 228.9
2100 Male, age 76, both hemispheres 226.1
2376 Male, age 61, both hemispheres 216.9
2808 Female, age 85, both hemispheres 213.6
2131 Male, age 76, both hemispheres 212.9
2564 Male, age 74, both hemispheres 207.8
2562 Male, age 61, both hemispheres 172.2
2805 Female, age 91, both hemispheres 166.4
Nucleus gracilis
nTPM: 227.7
2382 Male, age 80, both hemispheres 262.1
2627 Male, age 74, both hemispheres 232.6
2299 Female, age 85, both hemispheres 188.5
Nucleus raphe obscurus
nTPM: 255.1
2845 Female, age 85, midline 277.6
2800 Male, age 61, midline 253.2
2142 Male, age 76, midline 234.6
Nucleus raphe pallidus
nTPM: 233.6
1924 Male, age 61, midline 249.1
2183 Male, age 80, midline 234.6
2145 Male, age 76, midline 217.2
Nucleus tractus solitarii
nTPM: 176.0
2144 Female, age 91, right hemisphere 220.4
2656 Male, age 76, both hemispheres 198.7
2191 Female, age 85, both hemispheres 151.2
2307 Male, age 80, both hemispheres 133.6
Parvicellular reticular nuclei
nTPM: 237.6
2095 Male, age 76, both hemispheres 253.0
2119 Male, age 80, both hemispheres 236.2
2558 Male, age 74, both hemispheres 223.6
Parvicellular reticular nuclei, medullary
nTPM: 243.4
2189 Female, age 91, both hemispheres 259.7
2091 Female, age 85, both hemispheres 246.6
2181 Male, age 80, left hemisphere 223.9
Peritrigeminal nucleus
nTPM: 240.6
2179 Male, age 61, both hemispheres 252.9
2067 Female, age 85, both hemispheres 236.9
2136 Male, age 76, both hemispheres 231.9
Prepositus hypoglossal nucleus
nTPM: 220.8
2855 Female, age 85, right hemisphere 255.0
2086 Male, age 80, both hemispheres 186.7
Spinal trigeminal nucleus, caudal
nTPM: 233.6
2390 Female, age 91, both hemispheres 258.9
2312 Male, age 61, both hemispheres 254.7
2447 Male, age 76, both hemispheres 237.3
2308 Male, age 80, both hemispheres 216.5
2642 Male, age 74, both hemispheres 200.5
Spinal trigeminal nucleus, interpolar
nTPM: 256.4
2625 Male, age 61, both hemispheres 288.9
2066 Male, age 76, right hemisphere 251.8
2386 Female, age 85, both hemispheres 247.3
2033 Male, age 80, both hemispheres 247.0
2389 Female, age 91, both hemispheres 247.0
Spinal vestibular nucleus
nTPM: 248.9
2186 Female, age 91, both hemispheres 287.5
2748 Male, age 76, both hemispheres 264.8
2806 Female, age 85, both hemispheres 262.7
2384 Male, age 74, both hemispheres 245.9
2780 Male, age 80, both hemispheres 241.6
2796 Male, age 61, both hemispheres 191.0
Superior vestibular nucleus
nTPM: 216.0
2015 Male, age 80, both hemispheres 242.1
2383 Male, age 74, both hemispheres 218.9
2061 Male, age 76, both hemispheres 186.8
Ventral medullary reticular nucleus
nTPM: 254.2
2372 Male, age 61, both hemispheres 259.3
2060 Male, age 76, both hemispheres 249.1
Ventrolateral medulla, A1-C1 cell groups
nTPM: 236.4
2180 Male, age 61, both hemispheres 251.0
2118 Male, age 80, both hemispheres 243.3
2741 Female, age 85, both hemispheres 240.6
1986 Male, age 76, both hemispheres 231.2
2302 Female, age 91, both hemispheres 215.7

MEDULLA OBLONGATA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

199.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Medulla oblongata
Scaled Tags Per Million: 199.6
FF:10038-101F2 18-64 years, mixed 273.0
FF:10155-103A2 76 years, female 197.9
FF:10174-103C3 60 years, female 127.8

MEDULLA OBLONGATA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

182.8
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 182.8
Samples: 4

Max nTPM: 204.0
Min nTPM: 171.6
Sample A Female 204.0
Sample B Female 171.6
Sample C Male 175.3
Sample D Male 180.2

MEDULLA OBLONGATA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

3.4
Allen experiment id Experiment description Expression energy
Medulla oblongata
Expression energy: 3.4
71211477 Antisense, RP_050816_01_F10, Mouse strain C57BL/6J (56 days, male) 5.0
71724852 Antisense, RP_050921_01_H01, Mouse strain C57BL/6J (56 days, male) 1.7

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