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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:1717.4 nTPM
GTEx:1717.4 nTPM
FANTOM5:29.5 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA003372
Squamous epithelial cells Low



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1717.4
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1717.4
Samples: 156

Max nTPM: 5839.5
Min nTPM: 868.8
Std nTPM: 595.1
Median nTPM: 1634.5
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 5839.5
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 4401.7
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 3194.1
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 3083.7
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 2998.7
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 2781.4
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 2645.0
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 2576.0
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 2561.6
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 2479.0
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 2443.4
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 2421.0
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 2414.7
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 2366.6
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 2352.4
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 2341.7
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 2314.2
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 2284.6
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 2237.9
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 2223.3
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 2210.3
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 2193.4
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 2191.3
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 2138.2
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 2099.6
GTEX-16NPV-2526-SM-6M483 50-59 years, female 2089.3
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 2071.1
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 2060.0
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 2038.0
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 2016.3
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 2012.5
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1999.2
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 1998.0
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 1997.8
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 1994.2
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1989.9
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 1968.3
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 1963.8
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1963.4
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1926.4
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1915.8
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1900.3
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 1892.8
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 1877.7
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1873.0
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1850.0
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 1836.0
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 1833.1
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1827.6
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1820.7
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 1812.3
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1805.7
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 1803.9
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 1803.0
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 1800.6
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1781.0
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 1776.7
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1772.7
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1765.5
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1739.6
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1732.4
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1727.9
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1720.5
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1719.7
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1689.0
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1681.0
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 1678.3
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1672.7
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1667.4
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 1662.5
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 1661.6
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1660.3
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1659.9
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 1652.1
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 1647.0
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1641.2
GTEX-1C475-0526-SM-793AC 40-49 years, female 1638.6
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1636.2
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 1632.8
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 1604.6
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 1598.0
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1596.1
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1593.6
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1588.2
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1585.5
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 1583.3
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 1580.6
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 1579.9
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 1579.0
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1570.6
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 1570.3
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1569.0
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 1559.2
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1541.5
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1532.5
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 1528.9
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1525.2
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1516.5
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1509.4
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1495.9
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1494.6
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1493.8
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1493.8
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1488.2
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1486.9
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1478.6
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1466.6
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1464.0
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 1454.6
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1441.0
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1429.9
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1429.0
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 1427.7
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1425.3
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1419.8
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 1410.8
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1403.4
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1382.1
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1381.5
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1379.1
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1375.1
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1353.2
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 1334.4
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 1330.1
GTEX-11I78-2026-SM-5987C 50-59 years, female 1320.2
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1317.9
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1316.5
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 1313.4
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 1309.0
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1308.8
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1306.8
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1267.8
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 1257.7
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 1225.5
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1196.8
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 1165.2
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1158.7
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1135.4
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1129.6
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 1073.9
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1061.0
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1059.3
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1037.3
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1037.1
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 1032.9
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1014.9
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1007.1
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1005.0
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1003.9
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1003.6
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1002.0
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 964.0
GTEX-QCQG-1226-SM-48U23 50-59 years, female 961.1
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 949.6
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 905.7
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 868.8
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

29.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 29.5
FF:10204-103F6 68 years, female 29.5

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