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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA Brain:
208.5
nTPM
FANTOM5:
387.5
Scaled Tags Per Million
Pig:
87.9
nTPM
Allen mouse:
0.5
Expression energy
PONS - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
208.5
Sample id
Sample description
nTPM
Anterior cochlear nucleus, ventral nTPM: 181.4
2188
Female, age 91, both hemispheres
232.0
2301
Female, age 85, both hemispheres
208.5
2090
Male, age 80, both hemispheres
190.6
1984
Male, age 76, both hemispheres
94.6
Dorsal cochlear nucleus nTPM: 153.7
2187
Female, age 91, both hemispheres
200.3
2378
Male, age 80, both hemispheres
168.7
2802
Male, age 74, right hemisphere
156.9
2058
Male, age 76, both hemispheres
128.8
2370
Male, age 61, both hemispheres
113.8
Dorsal tegmental nucleus nTPM: 138.9
2083
Male, age 80, both hemispheres
185.3
2326
Male, age 74, both hemispheres
173.3
1936
Male, age 76, left hemisphere
109.4
2358
Male, age 61, both hemispheres
87.7
Dorsolateral tegmental area nTPM: 151.2
2751
Female, age 85, both hemispheres
249.9
2654
Male, age 80, both hemispheres
184.6
2337
Male, age 61, both hemispheres
140.3
2360
Male, age 74, both hemispheres
105.6
2141
Male, age 76, both hemispheres
75.7
Kolliker-Fuse nucleus nTPM: 153.9
2793
Female, age 91, left hemisphere
226.1
2163
Male, age 80, both hemispheres
143.7
2315
Male, age 76, right hemisphere
91.8
Lateral lemniscal nuclei nTPM: 166.5
2320
Female, age 91, left hemisphere
220.3
2453
Male, age 74, right hemisphere
164.6
2746
Female, age 85, left hemisphere
161.5
2036
Male, age 80, both hemispheres
158.6
2169
Male, age 76, both hemispheres
127.5
Lateral parabrachial nucleus nTPM: 173.2
2792
Male, age 76, both hemispheres
259.9
2013
Male, age 80, both hemispheres
188.2
2790
Male, age 61, both hemispheres
130.2
2139
Female, age 85, right hemisphere
114.7
Lateral vestibular nucleus nTPM: 146.3
2311
Male, age 80, both hemispheres
168.7
2184
Male, age 76, both hemispheres
123.8
Locus coeruleus nTPM: 107.6
2014
Male, age 55, unknown
129.9
2162
Male, age 80, both hemispheres
116.3
2720
Male, age 74, both hemispheres
116.2
2788
Male, age 74, unknown
112.6
2317
Female, age 72, unknown
104.5
2123
Female, age 91, both hemispheres
93.8
1980
Male, age 76, both hemispheres
80.2
Medial parabrachial nucleus nTPM: 166.9
2170
Female, age 91, both hemispheres
210.8
2463
Female, age 85, right hemisphere
186.1
2854
Male, age 80, both hemispheres
175.9
2786
Male, age 76, both hemispheres
147.9
2156
Male, age 61, both hemispheres
113.7
Medial periolivary nuclei nTPM: 164.4
2791
Male, age 74, right hemisphere
228.1
2081
Male, age 80, both hemispheres
192.8
2458
Female, age 91, both hemispheres
178.0
2063
Male, age 76, both hemispheres
127.4
2171
Female, age 85, both hemispheres
95.6
Motor facial nucleus nTPM: 166.8
2365
Male, age 74, right hemisphere
224.1
2126
Male, age 61, both hemispheres
201.1
2697
Female, age 85, both hemispheres
175.3
2795
Female, age 91, both hemispheres
158.2
2327
Male, age 80, both hemispheres
135.2
2062
Male, age 76, both hemispheres
107.2
Motor trigeminal nucleus nTPM: 149.3
2560
Male, age 74, both hemispheres
194.7
2321
Female, age 91, both hemispheres
181.2
2309
Male, age 76, both hemispheres
132.4
2079
Male, age 80, both hemispheres
129.4
2335
Male, age 61, both hemispheres
108.9
Nuclei of the trapezoid body nTPM: 143.5
2368
Female, age 91, both hemispheres
183.6
2166
Male, age 80, both hemispheres
164.3
2159
Male, age 61, both hemispheres
152.7
1983
Male, age 76, both hemispheres
129.8
2735
Female, age 85, both hemispheres
87.0
Nucleus raphe magnus nTPM: 145.8
2459
Female, age 91, both hemispheres
216.9
2328
Male, age 80, both hemispheres
176.1
2455
Male, age 74, both hemispheres
165.2
2051
Male, age 76, both hemispheres
160.6
2160
Male, age 61, both hemispheres
86.0
2172
Female, age 85, both hemispheres
70.3
Paramedian reticular nucleus nTPM: 185.6
2052
Male, age 76, both hemispheres
195.4
2313
Male, age 61, both hemispheres
191.9
2057
Male, age 80, both hemispheres
181.2
2050
Female, age 85, both hemispheres
174.1
Pedunculopontine tegmental nucleus nTPM: 147.1
2334
Male, age 80, both hemispheres
162.8
1921
Female, age 85, both hemispheres
141.9
2338
Male, age 61, both hemispheres
136.5
Pontine nuclei nTPM: 192.1
2454
Male, age 74, left hemisphere
335.2
2319
Female, age 91, both hemispheres
238.5
2109
Female, age 72, unknown
220.4
1863
Male, age 55, unknown
166.9
2727
Male, age 61, right hemisphere
160.3
1968
Male, age 76, left hemisphere
158.3
2115
Male, age 80, left hemisphere
157.1
2787
Female, age 85, both hemispheres
100.3
Pontine raphe nucleus nTPM: 116.3
2122
Female, age 85, midline
127.9
2853
Male, age 76, midline
104.7
Posteroventral cochlear nucleus nTPM: 194.0
2135
Female, age 91, both hemispheres
262.9
2341
Male, age 80, both hemispheres
260.4
2070
Male, age 76, both hemispheres
167.8
2752
Female, age 85, both hemispheres
143.2
2371
Male, age 61, both hemispheres
135.6
Principal sensory trigeminal nucleus nTPM: 138.0
2367
Female, age 91, left hemisphere
233.2
2008
Male, age 80, left hemisphere
129.7
2324
Male, age 76, both hemispheres
109.3
2158
Male, age 61, both hemispheres
80.0
Reticular pontine nucleus, caudal nTPM: 192.7
2559
Male, age 74, both hemispheres
249.4
2457
Female, age 91, both hemispheres
231.6
2092
Male, age 76, both hemispheres
171.6
2332
Male, age 80, right hemisphere
118.1
Reticular pontine nucleus, oral nTPM: 208.5
2361
Male, age 74, both hemispheres
260.7
2366
Female, age 91, both hemispheres
236.6
1939
Male, age 80, both hemispheres
206.9
2012
Female, age 85, both hemispheres
177.0
2167
Male, age 76, both hemispheres
161.1
Reticulotegmental nucleus nTPM: 142.9
2322
Female, age 91, both hemispheres
177.7
2452
Male, age 74, both hemispheres
156.9
2333
Male, age 80, both hemispheres
154.4
2325
Male, age 76, both hemispheres
82.6
Spinal trigeminal nucleus, oral nTPM: 144.9
2164
Male, age 80, both hemispheres
155.3
1978
Male, age 76, both hemispheres
151.0
2737
Female, age 85, both hemispheres
128.3
Subcoeruleus area nTPM: 162.2
2369
Female, age 85, left hemisphere
283.9
1958
Male, age 80, both hemispheres
167.3
2089
Male, age 76, left hemisphere
122.1
2323
Female, age 91, left hemisphere
120.3
2451
Male, age 74, both hemispheres
117.3
Superior olive nTPM: 188.8
2364
Male, age 74, right hemisphere
236.2
2020
Male, age 76, both hemispheres
210.2
2329
Male, age 80, right hemisphere
175.3
2561
Female, age 91, both hemispheres
161.9
1875
Female, age 85, both hemispheres
160.3
Ventral periolivary nuclei nTPM: 148.9
2023
Male, age 76, both hemispheres
250.8
2165
Male, age 80, both hemispheres
133.6
2794
Female, age 91, left hemisphere
117.2
2130
Female, age 85, both hemispheres
94.0
Ventrolateral tegmental area, A5 NE cell group nTPM: 173.0
2456
Female, age 91, both hemispheres
197.6
2449
Male, age 74, both hemispheres
181.3
2840
Female, age 85, both hemispheres
181.2
1959
Male, age 76, both hemispheres
172.5
2161
Male, age 80, both hemispheres
163.1
2359
Male, age 61, both hemispheres
142.2
PONS - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
87.9
Pig sample
Sample description
nTPM
Pons nTPM: 87.9
Samples: 4
Max nTPM: 102.4
Min nTPM: 63.9
Sample A
Female
85.9
Sample B
Female
63.9
Sample C
Male
99.3
Sample D
Male
102.4
PONS - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
