We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SEPTIN8
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE & INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCT & INT

  • SEPTIN8
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:200.1 nTPM
HPA Brain:230.3 nTPM
GTEx:200.1 nTPM
FANTOM5:215.2 Scaled Tags Per Million
Pig:120.9 nTPM
Mouse:200.0 nTPM
Allen mouse:3.5 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

230.3
Sample id Sample description nTPM
Amygdala
nTPM: 220.0
2814 Male, age 76, right hemisphere 250.2
2695 Female, age 67, right hemisphere 246.9
2514 Male, age 75, right hemisphere 221.9
2517 Female, age 94, left hemisphere 198.0
1987 Female, age 91, left hemisphere 183.1
Basal amygdala
nTPM: 201.5
2609 Male, age 75, right hemisphere 239.4
2827 Female, age 67, right hemisphere 235.1
2685 Female, age 94, left hemisphere 218.3
1955 Male, age 76, both hemispheres 183.8
2110 Male, age 80, left hemisphere 181.2
2243 Female, age 91, right hemisphere 151.1
Central amygdala
nTPM: 210.1
2826 Female, age 94, left hemisphere 269.9
2515 Male, age 75, right hemisphere 216.5
1905 Male, age 76, both hemispheres 205.4
2239 Male, age 80, left hemisphere 191.8
2701 Female, age 91, right hemisphere 166.7
Corticomedial amygdala
nTPM: 172.6
2429 Female, age 94, left hemisphere 206.7
2428 Male, age 75, right hemisphere 203.9
2535 Female, age 67, right hemisphere 185.9
2240 Male, age 76, both hemispheres 164.6
2829 Male, age 80, left hemisphere 155.4
2242 Female, age 91, right hemisphere 118.8
Lateral amygdala
nTPM: 230.3
2830 Female, age 67, right hemisphere 288.2
2516 Male, age 75, right hemisphere 259.1
1883 Male, age 76, both hemispheres 232.1
2534 Female, age 94, left hemisphere 225.0
2256 Male, age 80, left hemisphere 206.6
2255 Female, age 91, right hemisphere 170.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

200.1
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 200.1
Samples: 152

Max nTPM: 630.4
Min nTPM: 36.0
Std nTPM: 77.1
Median nTPM: 179.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 630.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 606.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 405.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 365.1
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 360.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 345.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 340.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 336.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 314.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 314.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 312.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 309.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 304.1
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 295.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 294.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 294.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 288.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 274.5
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 271.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 269.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 268.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 265.0
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 264.6
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 261.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 261.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 260.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 256.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 253.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 252.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 250.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 249.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 248.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 243.2
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 240.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 239.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 236.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 236.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 232.5
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 232.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 230.5
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 223.7
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 222.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 219.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 218.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 214.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 213.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 212.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 210.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 207.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 205.9
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 205.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 204.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 203.5
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 203.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 203.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 202.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 201.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 198.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 196.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 193.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 192.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 191.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 191.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 190.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 190.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 188.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 186.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 185.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 185.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 185.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 184.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 184.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 183.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 182.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 181.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 179.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 178.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 177.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 176.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 176.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 176.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 174.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 174.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 174.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 173.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 173.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 173.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 171.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 170.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 170.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 169.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 169.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 168.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 167.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 166.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 166.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 164.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 162.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 162.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 162.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 161.9
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 161.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 160.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 158.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 158.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 158.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 158.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 157.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 156.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 155.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 155.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 152.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 152.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 151.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 151.1
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 150.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 146.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 145.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 145.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 145.1
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 144.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 144.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 143.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 143.1
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 142.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 141.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 140.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 140.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 140.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 140.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 140.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 139.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 139.4
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 138.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 136.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 135.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 134.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 133.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 133.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 132.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 130.4
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 129.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 127.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 123.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 123.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 122.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 122.0
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 119.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 118.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 116.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 116.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 36.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

215.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 215.2
FF:10151-102I7 76 years, female 215.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

120.9
Pig sample Sample description nTPM
Amygdala
nTPM: 120.9
Samples: 4

Max nTPM: 135.4
Min nTPM: 102.2
Sample A Female 135.4
Sample B Female 130.9
Sample C Male 115.2
Sample D Male 102.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

200.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 200.0
Samples: 4

Max nTPM: 215.6
Min nTPM: 189.4
Sample A Male 190.8
Sample B Male 204.1
Sample C Female 215.6
Sample D Female 189.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

3.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 3.5
69549619 Antisense, RP_050222_01_F03, Mouse strain C57BL/6J (56 days, male) 3.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org