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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:267.2 nTPM
HPA Brain:128.9 nTPM
GTEx:267.2 nTPM
FANTOM5:119.2 Scaled Tags Per Million
Pig:140.4 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

128.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 125.6
1981 Female, age 72, midline 176.6
2565 Male, age 75, midline 123.3
2048 Male, age 55, midline 122.6
2194 Female, age 79, both hemispheres 116.0
2816 Male, age 47, midline 89.6
Cervical spinal cord, dorsal horn
nTPM: 128.9
2173 Female, age 72, unknown 197.8
2069 Male, age 47, both hemispheres 154.2
2296 Male, age 66, both hemispheres 136.4
1877 Male, age 55, unknown 103.8
2297 Male, age 75, both hemispheres 97.3
2721 Male, age 90, both hemispheres 83.7
Cervical spinal cord, ventral horn
nTPM: 124.3
2098 Female, age 72, unknown 165.6
2480 Male, age 75, both hemispheres 138.5
2809 Male, age 90, both hemispheres 129.9
2068 Male, age 55, unknown 115.3
2295 Male, age 66, both hemispheres 109.4
2820 Female, age 79, both hemispheres 87.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

267.2
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 267.2
Samples: 159

Max nTPM: 538.6
Min nTPM: 76.7
Std nTPM: 69.3
Median nTPM: 254.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 538.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 505.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 443.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 436.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 436.5
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 410.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 395.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 394.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 394.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 379.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 378.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 372.5
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 371.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 369.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 356.3
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 356.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 351.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 349.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 345.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 341.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 339.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 339.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 329.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 328.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 328.7
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 328.6
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 325.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 324.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 323.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 322.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 321.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 321.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 320.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 319.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 319.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 318.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 315.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 313.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 312.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 309.4
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 308.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 305.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 303.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 302.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 300.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 298.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 296.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 296.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 294.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 293.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 291.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 288.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 287.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 287.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 286.5
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 286.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 283.6
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 282.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 282.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 281.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 277.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 277.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 274.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 274.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 274.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 269.2
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 268.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 268.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 266.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 265.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 265.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 265.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 262.9
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 262.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 262.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 260.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 259.1
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 257.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 254.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 254.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 254.3
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 252.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 252.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 252.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 251.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 251.8
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 249.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 248.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 248.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 247.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 245.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 245.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 245.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 245.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 244.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 243.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 243.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 240.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 239.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 237.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 237.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 235.1
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 233.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 233.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 232.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 232.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 231.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 228.8
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 226.1
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 225.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 224.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 222.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 221.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 221.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 221.0
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 220.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 219.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 219.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 218.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 217.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 217.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 216.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 214.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 214.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 213.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 213.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 211.6
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 211.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 210.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 210.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 209.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 209.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 206.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 203.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 202.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 201.6
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 200.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 199.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 197.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 197.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 196.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 195.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 194.5
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 192.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 192.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 191.9
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 191.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 189.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 186.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 182.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 182.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 180.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 176.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 175.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 171.9
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 153.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 132.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 126.5
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 76.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

119.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 119.2
FF:10181-103D1 60 years, female 156.6
FF:10159-103A6 76 years, female 81.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

140.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 120.1
Samples: 4

Max nTPM: 134.0
Min nTPM: 110.6
Sample A Female 124.7
Sample B Female 111.2
Sample C Male 134.0
Sample D Male 110.6
Ventral spinal cord
nTPM: 140.4
Samples: 4

Max nTPM: 152.3
Min nTPM: 127.6
Sample A Female 135.3
Sample B Female 146.3
Sample C Male 152.3
Sample D Male 127.6

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