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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:125.7 nTPM
HPA Brain:121.3 nTPM
GTEx:125.7 nTPM
FANTOM5:214.9 Scaled Tags Per Million
Pig:84.6 nTPM
Mouse:186.8 nTPM
Allen mouse:22.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

121.3
Sample id Sample description nTPM
Amygdala
nTPM: 121.3
2514 Male, age 75, right hemisphere 149.3
1987 Female, age 91, left hemisphere 132.9
2695 Female, age 67, right hemisphere 125.1
2517 Female, age 94, left hemisphere 100.1
2814 Male, age 76, right hemisphere 99.3
Basal amygdala
nTPM: 91.7
2110 Male, age 80, left hemisphere 111.1
2243 Female, age 91, right hemisphere 106.2
1955 Male, age 76, both hemispheres 100.0
2685 Female, age 94, left hemisphere 91.5
2609 Male, age 75, right hemisphere 82.0
2827 Female, age 67, right hemisphere 59.6
Central amygdala
nTPM: 100.3
2515 Male, age 75, right hemisphere 115.1
2826 Female, age 94, left hemisphere 102.0
1905 Male, age 76, both hemispheres 101.7
2701 Female, age 91, right hemisphere 93.1
2239 Male, age 80, left hemisphere 89.5
Corticomedial amygdala
nTPM: 101.3
2428 Male, age 75, right hemisphere 124.5
2242 Female, age 91, right hemisphere 114.0
2240 Male, age 76, both hemispheres 113.3
2829 Male, age 80, left hemisphere 95.8
2429 Female, age 94, left hemisphere 91.6
2535 Female, age 67, right hemisphere 68.9
Lateral amygdala
nTPM: 90.7
2534 Female, age 94, left hemisphere 111.3
2256 Male, age 80, left hemisphere 102.5
1883 Male, age 76, both hemispheres 102.3
2255 Female, age 91, right hemisphere 92.7
2516 Male, age 75, right hemisphere 72.3
2830 Female, age 67, right hemisphere 63.3

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

125.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 125.7
Samples: 152

Max nTPM: 289.5
Min nTPM: 50.3
Std nTPM: 45.9
Median nTPM: 118.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 289.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 271.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 243.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 243.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 241.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 240.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 234.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 223.4
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 222.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 218.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 212.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 205.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 191.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 189.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 188.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 186.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 186.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 179.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 175.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 171.8
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 170.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 167.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 166.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 166.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 161.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 160.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 159.7
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 158.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 156.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 155.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 155.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 154.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 154.2
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 153.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 152.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 152.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 151.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 151.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 150.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 150.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 149.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 147.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 146.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 143.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 141.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 140.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 140.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 139.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 139.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 138.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 138.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 138.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 137.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 136.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 136.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 133.7
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 132.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 132.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 129.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 128.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 128.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 125.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 125.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 125.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 124.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 123.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 122.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 122.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 121.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 121.3
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 121.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 120.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 120.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 119.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 119.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 118.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 118.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 117.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 117.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 114.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 114.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 114.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 114.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 113.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 112.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 111.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 111.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 110.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 108.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 108.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 107.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 107.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 107.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 106.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 105.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 104.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 104.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 102.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 102.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 102.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 101.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 100.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 98.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 97.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 97.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 96.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 95.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 95.0
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 94.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 94.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 94.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 93.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 92.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 92.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 91.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 90.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 90.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 89.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 89.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 89.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 87.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 86.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 86.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 85.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 85.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 84.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 84.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 83.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 83.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 82.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 81.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 79.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 79.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 79.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 78.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 77.8
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 77.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 76.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 75.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 74.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 72.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 72.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 71.0
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 70.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 69.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 68.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 62.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 58.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 58.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 58.3
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 55.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 50.3
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

214.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 214.9
FF:10151-102I7 76 years, female 214.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

84.6
Pig sample Sample description nTPM
Amygdala
nTPM: 84.6
Samples: 4

Max nTPM: 116.2
Min nTPM: 71.0
Sample A Female 116.2
Sample B Female 71.0
Sample C Male 72.9
Sample D Male 78.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

186.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 186.8
Samples: 4

Max nTPM: 213.4
Min nTPM: 174.8
Sample A Male 183.7
Sample B Male 174.8
Sample C Female 213.4
Sample D Female 175.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

22.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 22.8
67779877 Antisense, RP_040922_01_E10, Mouse strain C57BL/6J (56 days, male) 26.2
71608217 Antisense, RP_050927_01_C01, Mouse strain C57BL/6J (56 days, male) 19.4

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