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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:343.7 nTPM
HPA Brain:586.9 nTPM
GTEx:343.7 nTPM
FANTOM5:478.9 Scaled Tags Per Million
Pig:617.6 nTPM
Mouse:728.4 nTPM
Allen mouse:19.1 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

586.9
Sample id Sample description nTPM
Amygdala
nTPM: 472.8
2814 Male, age 76, right hemisphere 610.1
1987 Female, age 91, left hemisphere 492.7
2517 Female, age 94, left hemisphere 465.1
2514 Male, age 75, right hemisphere 457.6
2695 Female, age 67, right hemisphere 338.8
Basal amygdala
nTPM: 556.9
2243 Female, age 91, right hemisphere 821.9
2110 Male, age 80, left hemisphere 700.7
2685 Female, age 94, left hemisphere 560.8
1955 Male, age 76, both hemispheres 505.0
2609 Male, age 75, right hemisphere 410.4
2827 Female, age 67, right hemisphere 342.3
Central amygdala
nTPM: 460.2
1905 Male, age 76, both hemispheres 549.7
2239 Male, age 80, left hemisphere 529.0
2826 Female, age 94, left hemisphere 417.3
2701 Female, age 91, right hemisphere 403.6
2515 Male, age 75, right hemisphere 401.6
Corticomedial amygdala
nTPM: 586.9
2829 Male, age 80, left hemisphere 840.5
2242 Female, age 91, right hemisphere 752.5
2240 Male, age 76, both hemispheres 556.3
2429 Female, age 94, left hemisphere 535.5
2428 Male, age 75, right hemisphere 428.8
2535 Female, age 67, right hemisphere 407.5
Lateral amygdala
nTPM: 398.0
1883 Male, age 76, both hemispheres 562.2
2534 Female, age 94, left hemisphere 448.9
2516 Male, age 75, right hemisphere 371.4
2256 Male, age 80, left hemisphere 363.4
2255 Female, age 91, right hemisphere 354.2
2830 Female, age 67, right hemisphere 287.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

343.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 343.7
Samples: 152

Max nTPM: 908.0
Min nTPM: 108.7
Std nTPM: 148.6
Median nTPM: 320.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 908.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 789.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 788.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 742.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 717.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 710.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 651.3
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 638.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 623.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 597.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 595.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 578.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 574.5
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 569.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 544.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 542.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 532.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 522.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 521.1
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 515.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 507.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 503.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 503.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 494.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 493.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 479.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 476.5
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 469.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 462.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 456.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 454.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 446.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 442.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 423.3
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 422.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 420.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 418.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 413.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 408.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 404.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 403.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 397.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 396.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 392.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 391.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 383.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 380.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 374.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 372.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 372.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 371.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 371.5
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 370.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 369.7
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 368.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 366.0
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 362.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 359.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 359.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 356.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 353.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 343.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 341.9
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 341.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 339.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 337.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 337.4
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 335.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 332.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 332.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 332.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 329.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 326.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 323.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 321.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 321.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 320.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 320.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 319.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 316.0
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 312.5
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 309.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 308.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 304.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 297.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 293.9
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 292.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 292.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 290.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 288.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 285.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 283.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 281.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 279.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 279.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 274.1
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 274.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 265.2
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 264.6
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 260.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 256.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 256.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 256.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 255.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 251.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 248.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 246.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 246.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 245.8
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 245.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 245.0
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 241.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 239.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 237.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 236.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 232.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 224.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 221.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 221.3
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 218.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 217.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 215.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 213.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 212.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 209.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 203.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 202.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 200.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 199.1
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 198.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 196.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 190.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 189.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 185.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 184.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 183.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 182.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 179.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 176.8
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 175.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 174.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 170.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 168.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 167.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 165.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 164.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 163.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 157.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 149.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 147.7
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 115.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 108.7
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

478.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 478.9
FF:10151-102I7 76 years, female 478.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

617.6
Pig sample Sample description nTPM
Amygdala
nTPM: 617.6
Samples: 4

Max nTPM: 880.6
Min nTPM: 455.2
Sample A Female 880.6
Sample B Female 455.2
Sample C Male 523.5
Sample D Male 611.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

728.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 728.4
Samples: 4

Max nTPM: 796.7
Min nTPM: 634.1
Sample A Male 796.7
Sample B Male 750.6
Sample C Female 634.1
Sample D Female 732.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

19.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 19.1
1134 Antisense, RP_Baylor_103130, Mouse strain C57BL/6J (56 days, male) 19.1
1133 Antisense, RP_Baylor_103130, Mouse strain C57BL/6J (56 days, male) 18.7

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