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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:87.3 nTPM
HPA Brain:90.3 nTPM
GTEx:87.3 nTPM
FANTOM5:164.5 Scaled Tags Per Million
Pig:147.3 nTPM
Mouse:134.0 nTPM
Allen mouse:6.2 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

90.3
Sample id Sample description nTPM
Amygdala
nTPM: 82.2
2514 Male, age 75, right hemisphere 89.4
2814 Male, age 76, right hemisphere 83.1
1987 Female, age 91, left hemisphere 81.2
2517 Female, age 94, left hemisphere 78.6
2695 Female, age 67, right hemisphere 78.6
Basal amygdala
nTPM: 80.0
1955 Male, age 76, both hemispheres 83.5
2110 Male, age 80, left hemisphere 83.3
2243 Female, age 91, right hemisphere 83.0
2685 Female, age 94, left hemisphere 81.0
2609 Male, age 75, right hemisphere 75.2
2827 Female, age 67, right hemisphere 74.2
Central amygdala
nTPM: 79.6
2239 Male, age 80, left hemisphere 90.9
2701 Female, age 91, right hemisphere 87.0
2515 Male, age 75, right hemisphere 75.0
1905 Male, age 76, both hemispheres 72.8
2826 Female, age 94, left hemisphere 72.2
Corticomedial amygdala
nTPM: 90.3
2240 Male, age 76, both hemispheres 102.1
2535 Female, age 67, right hemisphere 95.0
2242 Female, age 91, right hemisphere 92.8
2829 Male, age 80, left hemisphere 89.4
2429 Female, age 94, left hemisphere 87.7
2428 Male, age 75, right hemisphere 74.5
Lateral amygdala
nTPM: 71.9
1883 Male, age 76, both hemispheres 77.7
2516 Male, age 75, right hemisphere 76.5
2534 Female, age 94, left hemisphere 75.1
2256 Male, age 80, left hemisphere 74.2
2255 Female, age 91, right hemisphere 69.5
2830 Female, age 67, right hemisphere 58.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

87.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 87.3
Samples: 152

Max nTPM: 152.0
Min nTPM: 25.5
Std nTPM: 17.5
Median nTPM: 86.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 152.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 136.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 127.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 122.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 122.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 121.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 117.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 116.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 115.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 113.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 112.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 111.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 110.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 109.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 108.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 108.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 107.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 107.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 107.0
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 106.5
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 106.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 105.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 104.8
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 104.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 104.0
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 103.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 103.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 103.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 103.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 102.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 102.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 102.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 102.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 101.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 100.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 99.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 99.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 99.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 99.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 96.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 96.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 95.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 95.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 95.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 95.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 94.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 94.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 94.3
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 94.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 94.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 93.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 93.2
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 92.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 92.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 91.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 91.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 91.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 90.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 90.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 90.4
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 90.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 89.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 89.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 89.4
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 89.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 88.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 88.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 88.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 87.9
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 87.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 87.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 87.4
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 87.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 87.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 86.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 86.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 86.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 85.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 85.2
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 84.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 84.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 84.3
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 83.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 83.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 82.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 82.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 82.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 82.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 82.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 82.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 82.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 82.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 82.1
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 82.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 81.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 80.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 80.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 80.2
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 79.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 79.7
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 78.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 78.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 78.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 78.4
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 78.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 78.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 78.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 77.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 77.6
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 77.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 77.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 77.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 76.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 76.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 76.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 75.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 75.0
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 75.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 74.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 74.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 74.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 74.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 73.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 73.4
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 73.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 73.0
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 72.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 71.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 71.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 71.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 71.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 70.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 70.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 70.1
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 70.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 69.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 69.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 68.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 67.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 65.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 64.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 64.4
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 64.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 62.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 59.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 58.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 56.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 56.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 55.8
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 51.6
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 47.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 25.5
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

164.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 164.5
FF:10151-102I7 76 years, female 164.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

147.3
Pig sample Sample description nTPM
Amygdala
nTPM: 147.3
Samples: 4

Max nTPM: 169.1
Min nTPM: 122.1
Sample A Female 169.1
Sample B Female 147.1
Sample C Male 122.1
Sample D Male 151.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

134.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 134.1
Samples: 4

Max nTPM: 139.8
Min nTPM: 123.7
Sample A Male 138.4
Sample B Male 139.8
Sample C Female 123.7
Sample D Female 134.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

6.2
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 6.2
70565135 Antisense, RP_050623_04_C09, Mouse strain C57BL/6J (56 days, male) 6.2

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