MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:72.4 nTPM
HPA Brain:91.8 nTPM
GTEx:72.4 nTPM
FANTOM5:123.4 Scaled Tags Per Million
Pig:161.8 nTPM
Mouse:165.0 nTPM
Allen mouse:4.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 91.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 72.9
2219 Male, age 76, both hemispheres 83.5
1870 Female, age 42, unknown 83.4
1827 Male, age 72, unknown 79.1
1833 Male, age 53, unknown 78.8
1830 Male, age 51, unknown 75.7
2411 Female, age 72, unknown 74.7
2666 Male, age 74, left hemisphere 69.3
2019 Male, age 18, unknown 63.8
2828 Female, age 72, unknown 62.4
2586 Male, age 75, left hemisphere 58.4
Dorsal raphe nucleus
nTPM: 71.1
2750 Male, age 76, both hemispheres 79.7
1828 Male, age 53, unknown 71.3
2016 Female, age 72, unknown 70.9
2047 Male, age 72, unknown 66.9
2298 Female, age 72, unknown 66.9
Inferior colliculus
nTPM: 84.2
2849 Male, age 72, unknown 99.9
2097 Female, age 72, unknown 83.6
1848 Female, age 42, unknown 81.1
1890 Male, age 53, unknown 72.1
Median raphe nucleus
nTPM: 91.8
2220 Male, age 76, midline 91.8
Periaquaductal grey, anterior
nTPM: 75.3
1947 Male, age 18, unknown 80.2
2502 Female, age 75, unknown 76.4
1795 Male, age 51, unknown 69.2
Periaquaductal grey, dorsal
nTPM: 84.4
2850 Male, age 76, both hemispheres 101.6
1840 Male, age 53, unknown 83.5
1831 Male, age 72, unknown 77.7
2464 Female, age 72, unknown 74.7
Periaquaductal grey, lateral
nTPM: 77.5
2140 Male, age 76, both hemispheres 83.8
2272 Male, age 74, both hemispheres 76.5
2053 Male, age 18, unknown 72.2
Pretectal area
nTPM: 78.9
2224 Female, age 72, unknown 82.8
1816 Male, age 51, unknown 82.7
2273 Male, age 74, both hemispheres 82.1
1944 Female, age 72, unknown 81.1
2825 Male, age 18, unknown 80.1
1815 Male, age 53, unknown 79.9
1817 Female, age 42, unknown 79.3
2667 Female, age 75, unknown 77.5
2407 Male, age 75, both hemispheres 74.6
2007 Male, age 72, unknown 74.3
2316 Male, age 76, right hemisphere 73.6
Red nucleus
nTPM: 70.5
2725 Female, age 75, unknown 79.1
1821 Female, age 72, unknown 78.2
2503 Female, age 72, unknown 77.4
1954 Female, age 42, unknown 73.7
2823 Male, age 76, right hemisphere 72.0
2227 Male, age 72, unknown 70.5
1865 Male, age 51, unknown 69.7
2785 Male, age 18, unknown 67.9
2769 Male, age 72, unknown 67.6
1904 Male, age 53, unknown 66.9
2584 Male, age 75, left hemisphere 64.5
2588 Male, age 74, left hemisphere 58.9
Substantia nigra
nTPM: 70.8
1941 Male, age 53, unknown 83.9
2241 Male, age 72, unknown 80.6
2699 Male, age 18, unknown 79.5
1889 Female, age 72, unknown 77.3
2409 Female, age 72, unknown 72.6
1916 Female, age 42, unknown 67.7
1851 Male, age 51, unknown 64.7
2665 Male, age 74, both hemispheres 62.4
2590 Female, age 75, unknown 60.3
2583 Male, age 75, right hemisphere 59.0
Superior colliculus
nTPM: 74.8
1895 Male, age 76, right hemisphere 87.0
2587 Male, age 74, left hemisphere 81.7
1839 Male, age 51, unknown 78.2
2668 Female, age 75, unknown 77.1
2261 Male, age 18, unknown 76.3
1913 Female, age 42, unknown 76.0
1796 Male, age 53, unknown 72.8
2087 Female, age 72, unknown 70.5
2664 Male, age 75, both hemispheres 65.6
1995 Male, age 72, unknown 62.6
Ventral tegmental area
nTPM: 74.5
2223 Female, age 72, unknown 84.6
2218 Male, age 76, both hemispheres 78.3
1942 Male, age 51, unknown 76.6
2021 Male, age 53, unknown 70.2
2410 Female, age 72, unknown 68.9
1915 Female, age 42, unknown 68.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 72.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 72.4
Samples: 139

Max nTPM: 120.6
Min nTPM: 49.7
Std nTPM: 11.3
Median nTPM: 72.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 120.6
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 119.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 100.5
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 95.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 94.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 93.9
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 92.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 90.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 89.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 89.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 88.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 123.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 123.4
FF:10158-103A5 76 years, female 123.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 161.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 129.9
Samples: 4

Max nTPM: 143.5
Min nTPM: 111.3
Sample A Female 141.0
Sample B Female 111.3
Sample C Male 143.5
Sample D Male 123.8
Midbrain
nTPM: 161.7
Samples: 4

Max nTPM: 178.0
Min nTPM: 131.0
Sample A Female 176.4
Sample B Female 131.0
Sample C Male 178.0
Sample D Male 161.5
Periaqueductal gray
nTPM: 144.2
Samples: 3

Max nTPM: 155.3
Min nTPM: 126.5
Sample B Female 126.5
Sample C Male 150.8
Sample D Male 155.3
Superior colliculi
nTPM: 141.4
Samples: 4

Max nTPM: 157.0
Min nTPM: 103.3
Sample A Female 155.1
Sample B Female 103.3
Sample C Male 150.2
Sample D Male 157.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 165.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 165.0
Samples: 4

Max nTPM: 177.2
Min nTPM: 157.5
Sample A Male 157.5
Sample B Male 166.2
Sample C Female 177.2
Sample D Female 159.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.4
70565135 Antisense, RP_050623_04_C09, Mouse strain C57BL/6J (56 days, male) 4.4

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