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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
GTEx:179.6 nTPM
FANTOM5:354.9 Scaled Tags Per Million
Pig:143.1 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA007644Antibody CAB004435Antibody CAB016225
Glial cells HighHighHigh
Neuronal cells HighHighHigh







CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

179.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 179.6
Samples: 246

Max nTPM: 273.3
Min nTPM: 130.7
Std nTPM: 21.8
Median nTPM: 177.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 273.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 256.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 248.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 247.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 232.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 230.4
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 227.1
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 226.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 226.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 225.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 224.6
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 221.8
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 218.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 218.0
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 217.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 216.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 216.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 216.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 213.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 213.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 212.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 211.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 211.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 209.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 208.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 207.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 207.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 206.5
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 206.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 204.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 203.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 203.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 202.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 201.9
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 201.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 200.9
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 198.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 198.0
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 198.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 197.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 197.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 197.3
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 197.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 195.7
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 195.7
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 194.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 194.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 193.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 193.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 193.3
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 193.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 193.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 193.0
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 193.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 192.6
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 192.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 192.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 192.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 191.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 191.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 191.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 191.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 190.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 190.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 189.7
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 189.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 189.4
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 189.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 189.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 188.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 187.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 187.3
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 187.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 186.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 186.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 185.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 185.9
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 185.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 185.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 185.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 185.6
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 185.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 185.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 184.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 184.6
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 184.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 184.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 183.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 183.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 183.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 183.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 183.3
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 183.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 183.1
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 182.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 182.2
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 182.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 181.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 181.5
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 181.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 181.1
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 181.0
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 180.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 180.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 180.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 179.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 179.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 179.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 179.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 179.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 179.4
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 179.4
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 179.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 179.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 179.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 178.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 178.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 178.5
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 178.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 178.3
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 177.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 177.8
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 177.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 177.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 177.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 177.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 177.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 177.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 177.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 176.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 176.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 176.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 176.6
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 176.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 176.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 176.1
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 175.8
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 175.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 174.9
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 174.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 174.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 174.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 173.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 173.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 173.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 172.8
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 172.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 172.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 172.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 172.0
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 171.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 171.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 170.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 170.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 170.4
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 170.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 170.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 169.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 169.7
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 169.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 169.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 168.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 168.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 168.6
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 168.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 168.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 168.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 168.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 167.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 167.8
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 167.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 167.7
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 167.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 167.4
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 167.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 167.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 167.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 166.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 166.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 166.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 166.1
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 165.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 165.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 165.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 164.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 164.8
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 164.4
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 164.1
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 163.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 163.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 163.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 163.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 162.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 162.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 162.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 162.7
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 162.5
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 162.2
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 162.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 161.6
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 161.4
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 160.8
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 160.1
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 160.0
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 159.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 159.7
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 159.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 159.4
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 159.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 159.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 158.8
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 158.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 158.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 158.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 158.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 157.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 157.5
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 157.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 157.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 156.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 156.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 155.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 154.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 154.3
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 153.6
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 153.5
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 152.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 152.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 152.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 151.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 151.4
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 151.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 150.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 149.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 146.9
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 146.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 146.6
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 146.2
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 145.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 143.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 142.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 141.0
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 140.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 138.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 134.6
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 130.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

354.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 354.9
FF:10164-103B2 76 years, female 354.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

143.1
Pig sample Sample description nTPM
Caudate
nTPM: 143.1
Samples: 4

Max nTPM: 156.2
Min nTPM: 134.4
Sample A Female 143.6
Sample B Female 138.3
Sample C Male 156.2
Sample D Male 134.4

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