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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:513.8 nTPM
GTEx:513.8 nTPM
FANTOM5:219.6 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Antibody HPA014924
Squamous epithelial cells High



VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

513.8
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 513.8
Samples: 156

Max nTPM: 2110.2
Min nTPM: 1.5
Std nTPM: 476.8
Median nTPM: 441.6
GTEX-11I78-2026-SM-5987C 50-59 years, female 2110.2
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 2069.7
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 2065.7
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1908.3
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1683.3
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 1600.0
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1424.8
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 1395.2
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 1383.0
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 1324.9
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 1248.6
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 1238.9
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1238.6
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1228.2
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 1173.1
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 1168.6
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1121.9
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 1100.0
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 1098.4
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 1084.1
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1078.8
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1069.8
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1057.9
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1049.3
GTEX-14PKU-1326-SM-6871B 40-49 years, female 971.2
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 966.6
GTEX-QCQG-1226-SM-48U23 50-59 years, female 952.0
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 936.4
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 907.5
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 857.5
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 837.6
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 833.6
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 821.3
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 797.6
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 788.1
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 763.4
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 759.0
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 749.2
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 744.2
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 741.0
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 736.4
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 722.6
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 718.9
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 713.5
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 709.6
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 709.5
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 708.7
GTEX-Y8LW-1426-SM-5RQJJ 50-59 years, female 688.4
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 682.0
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 680.9
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 678.8
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 662.5
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 661.4
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 660.8
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 656.1
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 634.9
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 631.2
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 627.1
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 624.5
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 611.1
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 608.1
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 607.4
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 605.2
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 588.2
GTEX-1C475-0526-SM-793AC 40-49 years, female 564.8
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 555.5
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 543.4
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 542.9
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 541.1
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 529.0
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 523.8
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 506.1
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 490.1
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 487.2
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 486.9
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 468.2
GTEX-S341-1226-SM-4AD5S 40-49 years, female 461.6
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 441.7
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 441.4
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 440.8
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 412.9
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 405.9
GTEX-16NPV-2526-SM-6M483 50-59 years, female 401.5
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 397.1
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 378.9
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 375.2
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 373.3
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 352.6
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 348.8
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 337.0
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 331.5
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 319.7
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 296.9
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 294.2
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 289.3
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 281.1
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 279.7
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 261.6
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 220.5
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 219.2
GTEX-14A5I-2726-SM-5SIB3 50-59 years, female 214.9
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 199.9
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 198.7
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 191.2
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 190.4
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 190.2
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 170.6
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 170.0
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 153.6
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 131.1
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 128.4
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 109.4
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 108.8
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 103.6
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 98.4
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 96.7
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 94.7
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 94.1
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 90.5
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 84.7
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 67.1
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 43.2
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 32.7
GTEX-S4UY-1326-SM-4AD4X 40-49 years, female 26.0
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 24.0
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 21.9
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 21.7
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 16.8
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 15.7
GTEX-1HCU8-2026-SM-9YFLE 60-69 years, female 15.5
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 13.7
GTEX-147F3-1526-SM-5SIAK 50-59 years, female 13.6
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 10.4
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 10.1
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 10.1
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 8.6
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 8.4
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 7.8
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 7.4
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 7.3
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 7.2
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 7.2
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 7.0
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 6.3
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 6.2
GTEX-Y114-1926-SM-4TT8J 50-59 years, female 6.0
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 6.0
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 5.5
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 5.3
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 4.5
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 4.0
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 3.7
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 3.6
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 2.5
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 2.3
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1.5
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

219.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 219.6
FF:10204-103F6 68 years, female 219.6

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