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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:268.0 nTPM
HPA Brain:306.8 nTPM
GTEx:268.0 nTPM
FANTOM5:359.8 Scaled Tags Per Million
Pig:199.8 nTPM
Mouse:400.2 nTPM
Allen mouse:13.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

306.8
Sample id Sample description nTPM
Amygdala
nTPM: 281.0
2814 Male, age 76, right hemisphere 408.4
1987 Female, age 91, left hemisphere 283.3
2517 Female, age 94, left hemisphere 267.7
2695 Female, age 67, right hemisphere 237.6
2514 Male, age 75, right hemisphere 208.0
Basal amygdala
nTPM: 306.8
2243 Female, age 91, right hemisphere 381.4
1955 Male, age 76, both hemispheres 333.3
2609 Male, age 75, right hemisphere 310.7
2827 Female, age 67, right hemisphere 309.7
2685 Female, age 94, left hemisphere 280.4
2110 Male, age 80, left hemisphere 225.2
Central amygdala
nTPM: 291.7
1905 Male, age 76, both hemispheres 425.4
2826 Female, age 94, left hemisphere 308.0
2239 Male, age 80, left hemisphere 285.4
2515 Male, age 75, right hemisphere 281.9
2701 Female, age 91, right hemisphere 157.6
Corticomedial amygdala
nTPM: 306.3
2242 Female, age 91, right hemisphere 369.2
2829 Male, age 80, left hemisphere 340.8
2535 Female, age 67, right hemisphere 324.4
2428 Male, age 75, right hemisphere 288.1
2240 Male, age 76, both hemispheres 262.9
2429 Female, age 94, left hemisphere 252.6
Lateral amygdala
nTPM: 282.4
1883 Male, age 76, both hemispheres 386.1
2534 Female, age 94, left hemisphere 309.0
2830 Female, age 67, right hemisphere 284.0
2255 Female, age 91, right hemisphere 246.8
2256 Male, age 80, left hemisphere 241.3
2516 Male, age 75, right hemisphere 227.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

268.0
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 268.0
Samples: 152

Max nTPM: 570.1
Min nTPM: 16.0
Std nTPM: 126.6
Median nTPM: 257.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 570.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 544.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 543.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 536.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 516.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 513.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 509.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 508.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 498.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 486.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 484.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 466.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 465.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 464.4
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 459.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 454.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 451.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 439.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 435.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 430.1
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 423.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 419.5
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 413.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 412.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 408.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 408.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 402.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 400.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 395.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 394.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 384.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 384.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 383.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 369.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 364.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 364.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 363.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 362.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 359.1
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 355.6
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 350.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 341.0
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 340.7
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 340.7
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 330.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 330.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 329.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 327.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 325.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 321.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 313.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 310.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 308.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 308.0
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 301.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 298.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 293.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 292.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 289.2
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 287.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 284.9
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 283.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 283.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 282.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 277.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 274.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 273.8
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 272.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 272.4
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 266.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 265.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 264.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 263.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 259.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 259.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 257.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 257.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 256.5
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 255.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 254.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 249.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 249.7
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 247.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 245.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 242.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 242.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 241.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 239.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 236.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 235.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 233.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 228.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 225.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 212.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 211.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 207.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 205.2
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 199.1
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 198.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 197.3
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 194.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 192.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 189.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 185.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 184.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 183.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 181.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 176.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 175.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 171.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 171.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 170.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 170.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 167.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 165.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 164.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 161.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 160.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 157.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 157.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 152.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 151.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 146.5
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 145.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 141.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 137.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 135.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 134.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 132.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 130.6
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 127.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 124.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 123.2
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 120.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 120.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 113.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 111.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 106.2
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 103.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 103.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 98.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 96.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 95.5
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 93.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 92.0
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 89.5
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 77.9
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 76.1
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 60.8
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 51.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 43.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 16.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

359.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 359.8
FF:10151-102I7 76 years, female 359.8

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

199.8
Pig sample Sample description nTPM
Amygdala
nTPM: 199.8
Samples: 4

Max nTPM: 262.5
Min nTPM: 105.3
Sample A Female 262.5
Sample B Female 105.3
Sample C Male 226.3
Sample D Male 205.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

400.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 400.2
Samples: 4

Max nTPM: 436.6
Min nTPM: 335.1
Sample A Male 335.1
Sample B Male 421.4
Sample C Female 436.6
Sample D Female 407.7

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 13.3
74821712 Antisense, RP_060321_02_C05, Mouse strain C57BL/6J (56 days, male) 13.3

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