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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
HPA Brain:400.3 nTPM
FANTOM5:109.1 Scaled Tags Per Million
Pig:94.0 nTPM
Mouse:488.4 nTPM
Allen mouse:13.6 Expression energy

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

400.3
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 303.5
2032 Female, age 42, unknown 404.6
2497 Male, age 66, unknown 353.0
2396 Male, age 61, right hemisphere 153.0
Centromedial thalamic nucleus
nTPM: 318.0
2401 Male, age 76, right hemisphere 518.0
2279 Female, age 85, left hemisphere 118.0
Habenula
nTPM: 370.9
2276 Male, age 66, unknown 464.7
1957 Male, age 80, both hemispheres 380.9
2203 Male, age 61, left hemisphere 334.1
2252 Male, age 62, unknown 303.9
Lateral geniculate body
nTPM: 295.5
2399 Male, age 61, left hemisphere 438.1
2035 Female, age 72, unknown 389.3
1953 Male, age 62, unknown 361.9
2106 Female, age 67, right hemisphere 321.8
2857 Male, age 74, right hemisphere 320.5
2659 Male, age 66, unknown 297.2
2841 Male, age 80, both hemispheres 127.1
2575 Female, age 94, right hemisphere 107.8
Lateral thalamic nuclei
nTPM: 301.0
1903 Male, age 76, left hemisphere 404.1
2661 Female, age 72, unknown 398.4
2577 Male, age 74, both hemispheres 272.8
2765 Female, age 67, both hemispheres 224.2
2573 Female, age 94, left hemisphere 205.3
Medial dorsal thalamic nucleus
nTPM: 373.6
1859 Male, age 76, both hemispheres 485.3
2283 Male, age 80, right hemisphere 479.6
2492 Male, age 75, right hemisphere 476.3
2498 Male, age 66, unknown 438.1
2026 Male, age 62, unknown 400.9
2402 Female, age 67, both hemispheres 355.7
1810 Male, age 48, unknown 355.2
2576 Male, age 74, both hemispheres 348.5
1971 Male, age 61, right hemisphere 342.7
1930 Female, age 42, unknown 332.9
2660 Female, age 72, unknown 330.6
2039 Female, age 72, unknown 261.0
2572 Female, age 94, right hemisphere 250.0
Medial geniculate body
nTPM: 293.1
1811 Female, age 42, unknown 422.6
2207 Male, age 80, right hemisphere 387.9
2571 Male, age 75, right hemisphere 336.3
2657 Male, age 74, right hemisphere 300.0
2650 Female, age 94, left hemisphere 280.7
2217 Female, age 72, unknown 210.7
2049 Male, age 76, both hemispheres 113.5
Nucleus reuniens
nTPM: 138.6
2212 Female, age 67, left hemisphere 184.6
2205 Male, age 80, left hemisphere 123.3
2210 Female, age 85, left hemisphere 108.0
Nucleus rhomboideus
nTPM: 292.5
2206 Male, age 80, both hemispheres 470.1
2213 Female, age 67, left hemisphere 269.5
2280 Female, age 85, left hemisphere 138.0
Posterior thalamic nucleus
nTPM: 327.7
2266 Male, age 76, right hemisphere 406.5
2655 Male, age 74, right hemisphere 374.6
2495 Female, age 67, right hemisphere 349.8
2649 Female, age 94, both hemispheres 179.9
Pulvinar
nTPM: 380.6
1932 Male, age 80, right hemisphere 469.0
2496 Female, age 67, right hemisphere 434.6
2398 Male, age 61, left hemisphere 430.2
2582 Female, age 72, unknown 405.2
2214 Male, age 76, right hemisphere 366.2
2499 Male, age 66, unknown 362.6
1899 Female, age 42, unknown 355.4
1972 Male, age 62, unknown 344.5
1929 Male, age 48, unknown 331.7
2724 Male, age 74, right hemisphere 306.3
Subthalamic nucleus
nTPM: 95.0
2406 Female, age 72, unknown 121.1
2275 Male, age 66, unknown 111.1
2658 Male, age 74, both hemispheres 106.8
2216 Male, age 48, unknown 104.4
2282 Male, age 61, both hemispheres 100.1
2779 Female, age 42, unknown 81.3
2056 Female, age 72, unknown 76.5
2124 Male, age 62, unknown 58.8
Ventral posterolateral thalamic nucleus
nTPM: 400.3
2740 Male, age 76, right hemisphere 487.7
2581 Female, age 72, unknown 473.0
2197 Male, age 80, both hemispheres 425.6
2397 Male, age 61, right hemisphere 349.2
2570 Male, age 75, right hemisphere 340.7
2578 Male, age 74, both hemispheres 325.9
Ventral posteromedial thalamic nucleus
nTPM: 373.9
2758 Male, age 80, both hemispheres 530.7
2202 Male, age 61, left hemisphere 458.5
2281 Male, age 75, right hemisphere 355.0
2653 Male, age 74, both hemispheres 300.9
2127 Male, age 76, right hemisphere 224.2
Ventral thalamic nuclei
nTPM: 327.2
2858 Female, age 72, unknown 441.0
1860 Male, age 76, both hemispheres 410.7
1912 Female, age 42, unknown 368.6
2204 Male, age 80, both hemispheres 358.1
2285 Male, age 62, unknown 340.0
1845 Male, age 48, unknown 331.2
2580 Male, age 66, unknown 265.4
2652 Male, age 74, left hemisphere 232.8
2291 Female, age 72, unknown 197.0
Zona incerta
nTPM: 170.9
2208 Male, age 80, right hemisphere 339.6
2663 Female, age 72, unknown 305.2
2215 Male, age 66, unknown 72.6
2822 Male, age 74, right hemisphere 71.4
2403 Male, age 62, unknown 65.8

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

109.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 109.1
FF:10154-103A1 76 years, female 109.1

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

94.0
Pig sample Sample description nTPM
Thalamus
nTPM: 94.0
Samples: 4

Max nTPM: 147.1
Min nTPM: 41.2
Sample A Female 147.1
Sample B Female 62.5
Sample C Male 125.0
Sample D Male 41.2

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

488.4
Mouse sample Sample description nTPM
Thalamus
nTPM: 488.4
Samples: 4

Max nTPM: 517.4
Min nTPM: 446.6
Sample A Male 446.6
Sample B Male 510.9
Sample C Female 517.4
Sample D Female 478.5

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.6
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 13.6
74821712 Antisense, RP_060321_02_C05, Mouse strain C57BL/6J (56 days, male) 13.6

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