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TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM
ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN NASOPHARYNX
ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE
SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Consensus:180.4 nTPM
HPA Brain:40.1 nTPM
GTEx:180.4 nTPM
FANTOM5:46.2 Scaled Tags Per Million

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

40.1
Sample id Sample description nTPM
Amygdala
nTPM: 40.1
2695 Female, age 67, right hemisphere 73.4
2814 Male, age 76, right hemisphere 38.4
2514 Male, age 75, right hemisphere 35.6
2517 Female, age 94, left hemisphere 35.1
1987 Female, age 91, left hemisphere 17.9
Basal amygdala
nTPM: 27.8
2827 Female, age 67, right hemisphere 40.1
2609 Male, age 75, right hemisphere 36.7
1955 Male, age 76, both hemispheres 32.2
2110 Male, age 80, left hemisphere 25.3
2685 Female, age 94, left hemisphere 16.9
2243 Female, age 91, right hemisphere 15.6
Central amygdala
nTPM: 35.2
2826 Female, age 94, left hemisphere 64.3
2515 Male, age 75, right hemisphere 48.4
1905 Male, age 76, both hemispheres 38.3
2239 Male, age 80, left hemisphere 14.4
2701 Female, age 91, right hemisphere 10.6
Corticomedial amygdala
nTPM: 23.3
2428 Male, age 75, right hemisphere 36.3
2240 Male, age 76, both hemispheres 23.7
2429 Female, age 94, left hemisphere 22.9
2829 Male, age 80, left hemisphere 22.3
2535 Female, age 67, right hemisphere 20.2
2242 Female, age 91, right hemisphere 14.3
Lateral amygdala
nTPM: 39.6
2516 Male, age 75, right hemisphere 66.1
2534 Female, age 94, left hemisphere 65.0
2830 Female, age 67, right hemisphere 50.9
1883 Male, age 76, both hemispheres 29.7
2255 Female, age 91, right hemisphere 13.8
2256 Male, age 80, left hemisphere 12.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

180.4
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 180.4
Samples: 152

Max nTPM: 1606.6
Min nTPM: 33.3
Std nTPM: 177.6
Median nTPM: 130.4
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 1606.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 885.6
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 740.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 682.2
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 578.2
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 538.2
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 510.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 455.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 447.8
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 434.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 401.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 378.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 372.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 351.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 347.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 345.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 342.4
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 337.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 307.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 306.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 305.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 277.8
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 276.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 270.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 252.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 245.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 232.5
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 221.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 218.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 214.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 214.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 213.4
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 210.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 210.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 210.1
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 207.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 205.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 202.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 202.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 201.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 201.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 201.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 193.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 193.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 188.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 183.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 175.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 175.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 174.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 173.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 169.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 168.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 168.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 164.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 162.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 162.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 160.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 160.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 159.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 159.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 157.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 157.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 156.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 152.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 148.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 147.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 145.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 139.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 138.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 137.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 137.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 136.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 135.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 133.7
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 131.5
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 131.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 129.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 128.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 127.6
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 125.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 125.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 125.1
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 125.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 125.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 124.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 123.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 120.6
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 120.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 116.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 115.9
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 115.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 114.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 114.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 113.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 110.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 109.8
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 108.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 106.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 104.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 102.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 102.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 98.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 97.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 96.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 95.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 95.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 95.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 94.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 93.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 92.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 92.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 91.1
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 89.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 89.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 87.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 86.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 85.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 85.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 84.4
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 82.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 81.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 81.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 81.1
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 80.0
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 77.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 77.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 77.0
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 76.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 74.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 72.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 71.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 69.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 69.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 68.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 67.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 65.7
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 62.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 61.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 59.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 58.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 58.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 57.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 57.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 54.2
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 53.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 45.0
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 43.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 42.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 42.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 41.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 38.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 33.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

46.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 46.2
FF:10151-102I7 76 years, female 46.2

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